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VectorBase Related Publications »
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VectorBase-Supported Publications
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| 2008 |
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How can ontologies help vector biology?
Topalis P, Lawson D, Collins FH, Louis C Trends Parasitol. 2008 Jun;24(6):249-52. Epub 2008 Apr24
PMID: 18440275
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Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase.
Topalis P, Tzavlaki C, Vestaki K, Dialynas E, Sonenshine DE, Butler R,
Bruggner RV, Stinson EO, Collins FH, Louis C. Insect Mol Biol. 2008 Feb;17(1):87-9
PMID: 18237287
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Genomic resources for invertebrate vectors of human pathogens, and the role of VectorBase.
Megy K, Hammond M, Lawson D, Bruggner RV, Birney E, Collins FH. Infect Genet Evol. 2008 Jan 3.
PMID: 18262474
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| 2007 |
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Genome sequence of Aedes aegypti, a major arbovirus vector.
Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M,
Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, Bonaldo MF, Zhu J, Sinkins SP, Hogenkamp DG,
Amedeo P, Arensburger P, Atkinson PW, Bidwell S, Biedler J, Birney E, Bruggner RV, Costas J,
Coy MR, Crabtree J, Crawford M, Debruyn B, Decaprio D, Eiglmeier K, Eisenstadt E, El-Dorry H,
Gelbart WM, Gomes SL, Hammond M, Hannick LI, Hogan JR, Holmes MH, Jaffe D, Johnston JS,
Kennedy RC, Koo H, Kravitz S, Kriventseva EV, Kulp D, Labutti K, Lee E, Li S, Lovin DD, Mao C,
Mauceli E, Menck CF, Miller JR, Montgomery P, Mori A, Nascimento AL, Naveira HF, Nusbaum C,
O'leary S, Orvis J, Pertea M, Quesneville H, Reidenbach KR, Rogers YH, Roth CW, Schneider JR,
Schatz M, Shumway M, Stanke M, Stinson EO, Tubio JM, Vanzee JP, Verjovski-Almeida S, Werner D,
White O, Wyder S, Zeng Q, Zhao Q, Zhao Y, Hill CA, Raikhel AS, Soares MB, Knudson DL, Lee NH,
Galagan J, Salzberg SL, Paulsen IT, Dimopoulos G, Collins FH, Birren B, Fraser-Liggett CM, Severson DW., Science. 2007 Jun 22;316(5832):1718-23.
PMID: 17510324
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Analysis of 14 BAC sequences from the Aedes aegypti genome: A benchmark for genome annotation and assembly
Lobo NF, Campbell KS, Thaner D, deBruyn B, Koo H, Gelbart WM, Loftus BJ, Severson DW, Collins FH., Genome Biol. 2007 May 22;8(5):R88.
PMID: 17519023
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VectorBase: A home for invertebrate vectors of human pathogens.
Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Emmert D, Hammond M, Hill CA, Kennedy RC, Lobo NF, MacCallum MR, Madey G, Megy K, Redmond S, Russo S, Severson DW, Stinson EO, Topalis P, Zdobnov EM, Birney E, Gelbart WM, Kafatos FC, Louis C, Collins F., Nucleic Acids Res. 2007 Jan;35(Database issue):D503-5
PMID: 17145709
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Update of the Anopheles gambiae PEST genome assembly.
Sharakhova, M.V., Hammond, M.P., Lobo, N.F., Krzywinski, J., Unger, M., Hillenmeyer, M.E., Bruggner, R.V., Birney, E., and Collins, F.H., Genome Biol. 2007 Jan 8;8(1):R5
PMID: 17210077
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| 2006 |
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Biochemical, molecular and functional characterization of PISCF-allatostatin, a regulator of juvenile hormone biosynthesis in the mosquito Aedes aegypti
Li, Y., Hernandez-Martinez, S., Fernandez, F., Mayoral, J.G., Topalis, P., Priestap, H., Perez, M., Navare, A., and Noriega, F.G., J Biol Chem. 2006 Sep 12;
PMID: 16968697
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Isolation and characterization of the RanGAP gene in the mosquito Aedes aegypti
Cha SJ, Lobo N, Debruyn B, Severson DW., DNA Seq. 2006 Jun;17(3):223-30
PMID: 17286051
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High efficiency germ line transformation of mosquitoes
Lobo NF, Clayton JR, Fraser MJ, Kafatos FC, Collins FH., Nat Protoc. 2006;1(3):1312-7.
PMID: 17406416
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| 2005 |
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Functional genomic analysis of midgut epithelial responses in Anopheles during Plasmodium invasion.
Vlachou D, Schlegelmilch T, Christophides GK, Kafatos FC., Curr Biol. 2005 Jul 12;15(13):1185-95
PMID: 16005290
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AnoEST: Toward A. gambiae functional genomics.
Kriventseva EV, Koutsos AC, Blass C, Kafatos FC, Christophides GK, Zdobnov EM., Genome Res. 2005 Jun;15(6):893-9
PMID: 15899967
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| 2004 |
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AnoXcel: A database of Anopheles gambiae proteins oriented to the bench scientist.
Ribeiro, J.M.C., Topalis, P. and Louis, C., Insect Mol. Biol. 2004 Oct;13(5), 449-457
PMID: 15373803
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Published Data Displayed on VectorBase
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| 2006 |
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ReAnoCDS:Anopheles gambiae genome reannotation through synthesis of ab initio and comparative gene prediction algorithms.
Li J, Riehle MM, Zhang Y, Xu J, Oduol F, Gomez SM, Eiglmeier K, Ueberheide BM, Shabanowitz J, Hunt DF, Ribeiro JM, Vernick KD., Genome Biol. 2006;7(3):R24.
PMID: 16569258
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| 2005 |
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PDB_Spice: Adding Some SPICE to DAS.
Prlic A, Down TA, Hubbard TJ., Bioinformatics. 2005 Sep 1;21
PMID: 16204122
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JHU MS Data: Genome annotation of Anopheles gambiae using mass spectrometry-derived data.
Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A., BMC Genomics. 2005 Sep 19;6:128.
PMID: 16171517
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| 2004 |
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SNAP: Gene finding in novel genomes.
Korf I., BMC Bioinformatics. 2004 May 14;5:59
PMID: 15144565
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Publications using VectorBase Data
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| 2008 |
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The Aedes aegypti genome: a comparative perspective
Korf I., Insect Mol Biol. 2008 Feb;17(1):1-8.
PMID: 18237279
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