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VectorBase
All organisms A. gambiae A. aegypti I. scapularis C. quinquefasciatus P. humanus
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Chromosome Image Naming Scheme

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Can I convert the output to fit into other analysis program?

Formatomatic

Population genetic file creator and converter
Install this program and convert csv(comma separated value) files to fit into Arlenquin, Genepop(also Fstat), and Immanc.
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ND Ensembl IMBB Harvard Imperial College