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    Sequence and assembly

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    • Contigs
      Track showing underlying assembly contigs.
    • Sequence
      Track showing sequence in both directions. Only displayed at 1Kb and below.

    Genes and transcripts

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    • Genes
      This track comprises multiple analyses; RNA genes produced by filtering predictions from tRNAscan-SE v1.23.; Genes annotated by merging ab initio and RNA-seq-based predictions, augmented with manual annotations (PMID: 26483478).; RNA genes produced by filtering alignments of Rfam (release 12.1) covariance models.

    mRNA and protein alignments

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    • Rfam Models
      Covariance models from Rfam (release 12.1), aligned to the genome with 'cmscan' from the Infernal suite of programs.
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      Comparative genomics

        Repeat regions

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          Information and decorations

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          • %GC
            Shows percentage of Gs & Cs in region
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            Shows the scalebar
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            Shows the length of the region being displayed
          • Alignment Difference Legend
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            Show counts of number of tracks turned off by the user
          • Information ()
            Details of the region shown in the image

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