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    Sequence and assembly

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    • Contigs
      Track showing underlying assembly contigs.
    • Sequence
      Track showing sequence in both directions. Only displayed at 1Kb and below.

    Simple features

      Genes and transcripts

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        • Genes
          This track comprises multiple analyses; RNA genes produced by filtering alignments of Rfam (release 12.1) covariance models.; Updates to the gene models from the VectorBase community.; Genes annotated with MAKER by VectorBase.; RNA genes produced by filtering predictions from tRNAscan-SE v1.23.

        mRNA and protein alignments

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        • Rfam Models
          Covariance models from Rfam (release 12.1), aligned to the genome with 'cmscan' from the Infernal suite of programs.
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          Comparative genomics

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            Repeat regions

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              Information and decorations

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              • %GC
                Shows percentage of Gs & Cs in region
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                Shows the scalebar
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                Shows the length of the region being displayed
              • Alignment Difference Legend
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                Show counts of number of tracks turned off by the user
              • Information ()
                Details of the region shown in the image

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