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    Sequence and assembly

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    • Contigs
      Track showing underlying assembly contigs.
    • Sequence
      Track showing sequence in both directions. Only displayed at 1Kb and below.

    Simple features

      Genes and transcripts

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        • Genes
          This track comprises multiple analyses; RNA genes produced by filtering predictions from tRNAscan-SE v1.23.; RNA genes produced by filtering alignments of Rfam (release 12.1) covariance models.; Genes annotated with MAKER by VectorBase.; Updates to the gene models from the VectorBase community.
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          mRNA and protein alignments

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          • Rfam Models
            Covariance models from Rfam (release 12.1), aligned to the genome with 'cmscan' from the Infernal suite of programs.
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            Comparative genomics

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              Variation

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              • Sequence variants (all sources) (Variant - All sources)
                Sequence variants from all sources

              Variation sets

                Repeat regions

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                  Information and decorations

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                  • %GC
                    Shows percentage of Gs & Cs in region
                  • Scale bar ()
                    Shows the scalebar
                  • Ruler ()
                    Shows the length of the region being displayed
                  • Alignment Difference Legend
                  • Gene Legend
                  • Variant Legend
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                  • Disabled track summary ()
                    Show counts of number of tracks turned off by the user
                  • Information ()
                    Details of the region shown in the image

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