anopheles_farauti_report_2015_06.txt

Description: 

Description of the fate of every transcript in the old assembly, along with
statistics to judge the quality and quantity of evidence.
Columns:
* transcript: stable ID
* status: result of projection
* biotype: type of gene, e.g. protein_coding, miRNA
* cdna_length: the sum of exon lengths
* coding_length: the sum of CDS lengths
* exons: number of exons in the transcript
* cds: number of CDS regions in the transcript
* protein_features: number of protein domains annotated by InterProScan
* exon_complete: number of exons that map in their entirety
* exon_partial: number of exons that map partially
* exon_missing: number of exons that do not map at all
* exon_locations: number of different scaffolds/strands to which exons map
* cds_complete: number of CDS regions that map in their entirety
* cds_partial: number of CDS regions that map partially
* cds_missing: number of CDS regions that do not map at all
* cds_locations: number of different scaffolds/strands to which CDS regions map
* cds_translates: 1 if the CDS produce a valid translation, 0 otherwise
* orthologs: number of orthologs (in VectorBase release 1504)
* paralogs: number of paralogs (in VectorBase release 1504)
* paralogs_projected: number of paralogs that are projected
* paralogs_list: a list of stable IDs of the paralogs, suffixed with ':1' if
the paralog is projected, 0 otherwise
* gene_split: number of genes that have a 'split' relationship with the
transcript. (Comparative analysis infers that an ancestral gene split into
two or more genes, and that the ancestral gene is inferred to be homologous
to other, unsplit, genes.)
* gene_split_projected: number of split genes that are projected
* gene_split_list:a list of stable IDs of the split genes, suffixed with ':1'
if the split gene is projected, 0 otherwise
* duplicates: number of transcripts with identical nucleotide sequence in CDS
regions
* duplicates_projected: number of duplicates that are projected
* duplicates_list: a list of stable IDs of the duplicates, suffixed with ':1'
if the duplicate is projected, 0 otherwise
* overlapping: number of transcripts that overlap (on either strand)
* overlapping_projected: number of overlapping transcripts that are projected
* overlapping_list: a list of stable IDs of the overlapping transcripts,
suffixed with ':1' if the overlapping transcript is projected, 0 otherwise

Download: 
Version: 
v1.00
Organism: 
Anopheles farauti
Status: 
Current
Download Count: 
565
Release Date: 
June, 2015
File Type: 
Transcript projection
File Format: 
TXT