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VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 50 of 662
Operations
File Organism Size Type Description
Aedes-aegypti_MSM-STATS_VB-2018-04.txt.gz Aedes aegypti 27.77 MB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Aedes-aegypti-LVP_AGWG_CHROMOSOMES_AaegL5.fa.gz Aedes aegypti 389.25 MB Chromosomes LVP_AGWG strain genomic chromosomes sequences, AaegL5 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-aegypti-Aag2-cell-line_CONTIGS_Aag2.fa.gz Aedes aegypti 529.41 MB Contigs Aag2 cell line strain genomic contigs sequences, Aag2 assembly.
Aedes-aegypti-Liverpool_CONTIGS_AaegL3.fa.gz Aedes aegypti 390.85 MB Contigs Liverpool Strain genomic contig sequences, AaegL3 assembly.
Aedes-aegypti-LVP_AGWG_SCAFFOLDS_AaegL5.fa.gz Aedes aegypti 25.1 MB Scaffolds LVP_AGWG strain genomic scaffolds sequences, AaegL5 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-aegypti-Aag2-cell-line_SCAFFOLDS_Aag2.fa.gz Aedes aegypti 529.44 MB Scaffolds Aag2 cell line strain genomic scaffolds sequences, Aag2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-aegypti-LVP_AGWG_PEPTIDES_AaegL5.1.fa.gz Aedes aegypti 5.62 MB Peptides LVP_AGWG strain peptide sequences, AaegL5.1 geneset.
Aedes-aegypti-LVP_AGWG_TRANSCRIPTS_AaegL5.1.fa.gz Aedes aegypti 18.51 MB Transcripts LVP_AGWG strain transcript sequences, AaegL5.1 geneset.
Aedes-aegypti-LVP_AGWG_BASEFEATURES_AaegL5.1.gff3.gz Aedes aegypti 5 MB Basefeatures LVP_AGWG strain AaegL5.1 geneset in GFF3 format.
Aedes-aegypti-LVP_AGWG_BASEFEATURES_AaegL5.1.gtf.gz Aedes aegypti 4.08 MB Basefeatures LVP_AGWG strain AaegL5.1 geneset in GTF (v2.2) format.
Aedes-aegypti_EST-CLIPPED_2012-12.fa.gz Aedes aegypti 64.7 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Aedes-aegypti_EST-RAW_2012-12.fa.gz Aedes aegypti 64.87 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Aedes-aegypti-Liverpool_BAC-ENDS_2012-12.fa.gz Aedes aegypti 28.21 MB BAC ends Liverpool strain BAC end sequences from the NCBI trace archive as of December 2012.
Aedes-aegypti-Aag2-cell-line_CONTIG2SCAFFOLD_Aag2.agp.gz Aedes aegypti 28.36 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes aegypti Aag2 cell line strain, Aag2 assembly.
Aedes-aegypti-Liverpool_CONTIG2SCAFFOLD_AaegL3.agp.gz Aedes aegypti 878.29 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes aegypti Liverpool strain, AaegL3 assembly.
Aedes-aegypti-LVP_AGWG_SCAFFOLD2CHROMOSOME_AaegL5.agp.gz Aedes aegypti 18.17 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Aedes aegypti LVP_AGWG strain, AaegL5 assembly.
Aedes-aegypti-Liverpool_MAPPINGS_AaegL3.5-AaegL5.1.txt Aedes aegypti 1.11 MB ID Mapping Stable ID mapping between genesets AaegL3.5 and AaegL5.1
Aedes-aegypti-Liverpool_MAPPINGS_AaegL3.3-AaegL3.4.txt Aedes aegypti 104.44 KB ID Mapping Stable ID mapping between genesets AaegL3.3 and AaegL3.4 (RNA gene update)
Aedes-aegypti-Liverpool_MODIFICATIONS_AaegL2.2-AaegL3.1-ncRNA.txt Aedes aegypti 61.66 KB ID Mapping Liverpool strain gene prediction stable identifier mapping for ncRNA from the AaegL2.2 to AaegL3.1 geneset
Aedes-aegypti-Aag2-cell-line_REPEATS.lib Aedes aegypti 1.7 MB RepeatMasker library RepeatMasker library file of repeats for Aedes aegypti, Aag2 cell line strain.
Aedes-aegypti-Liverpool_REPEATS.lib Aedes aegypti 5.27 MB RepeatMasker library RepeatMasker library file of repeats for Aedes aegypti, Liverpool strain.
Aedes-aegypti-LVP_AGWG_REPEATFEATURES_AaegL5.gff3.gz Aedes aegypti 107.2 MB Repeat features LVP_AGWG strain AaegL5 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-aegypti-Aag2-cell-line_REPEATFEATURES_Aag2.gff3.gz Aedes aegypti 83.78 MB Repeat features Aag2 cell line strain Aag2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-aegypti-Liverpool_REPEATFEATURES_AaegL3.gff3.gz Aedes aegypti 91.05 MB Repeat features Liverpool strain AaegL3 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-albopictus_MSM-STATS_VB-2018-04.txt.gz Aedes albopictus 6.73 MB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Aedes-albopictus-C6-36-cell-line_CONTIGS_GCA_001876365.2.fa.gz Aedes albopictus 675.21 MB Contigs C6/36 cell line strain genomic contigs sequences, GCA_001876365.2 assembly.
Aedes-albopictus-Foshan_CONTIGS_AaloF1.fa.gz Aedes albopictus 516.78 MB Contigs Foshan strain genomic contigs sequences, AaloF1 assembly.
Aedes-albopictus-C6-36-cell-line_SCAFFOLDS_GCA_001876365.2.fa.gz Aedes albopictus 675.21 MB Scaffolds C6/36 cell line strain genomic scaffolds sequences, GCA_001876365.2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-albopictus-Foshan_SCAFFOLDS_AaloF1.fa.gz Aedes albopictus 518.01 MB Scaffolds Foshan strain genomic scaffolds sequences, AaloF1 assembly (not repeat-masked).
Aedes-albopictus-C6-36-cell-line_PEPTIDES_NCBI-101.fa.gz Aedes albopictus 10.18 MB Peptides C6/36 cell line strain peptide sequences, NCBI-101 geneset.
Aedes-albopictus-Foshan_PEPTIDES_AaloF1.2.fa.gz Aedes albopictus 5.07 MB Peptides Foshan strain peptide sequences, AaloF1.2 geneset.
Aedes-albopictus-C6-36-cell-line_TRANSCRIPTS_NCBI-101.fa.gz Aedes albopictus 27.04 MB Transcripts C6/36 cell line strain transcript sequences, NCBI-101 geneset.
Aedes-albopictus-Foshan_TRANSCRIPTS_AaloF1.2.fa.gz Aedes albopictus 11.57 MB Transcripts Foshan strain transcript sequences, AaloF1.2 geneset.
Aedes-albopictus-C6-36-cell-line_BASEFEATURES_NCBI-101.gff3.gz Aedes albopictus 6.74 MB Basefeatures C6/36 cell line strain NCBI-101 geneset in GFF3 format.
Aedes-albopictus-C6-36-cell-line_BASEFEATURES_NCBI-101.gtf.gz Aedes albopictus 6.25 MB Basefeatures C6/36 cell line strain NCBI-101 geneset in GTF (v2.2) format.
Aedes-albopictus-Foshan_BASEFEATURES_AaloF1.2.gff3.gz Aedes albopictus 5.12 MB Basefeatures Foshan strain AaloF1.2 geneset in GFF3 format.
Aedes-albopictus-Foshan_BASEFEATURES_AaloF1.2.gtf.gz Aedes albopictus 1.98 MB Basefeatures Foshan strain AaloF1.2 geneset in GTF (v2.2) format.
Aedes-albopictus-NIAID_GAPW01.fa.gz Aedes albopictus 1.94 MB Assembled transcriptome TSA:GAPW00000000.1 from reproductive organs
Aedes-albopictus-C6-36-cell-line_CONTIG2SCAFFOLD_GCA_001876365.2.agp.gz Aedes albopictus 21.59 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes albopictus C6/36 cell line strain, GCA_001876365.2 assembly.
Aedes-albopictus-Foshan_CONTIG2SCAFFOLD_AaloF1.agp.gz Aedes albopictus 6.03 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes albopictus Foshan strain, AaloF1 assembly.
Aedes-albopictus-Foshan_MAPPINGS_AaloF1.1-AaloF1.2.txt Aedes albopictus 37.02 KB ID Mapping Stable ID mapping between genesets AaloF1.1 and AaloF1.2 (RNA gene update)
Aedes-albopictus-C6-36-cell-line_REPEATS.lib.gz Aedes albopictus 7.33 MB RepeatMasker library RepeatMasker library file of repeats for Aedes albopictus, C6/36 cell line strain.
Aedes-albopictus-C6-36-cell-line_REPEATFEATURES_GCA_001876365.2.gff3.gz Aedes albopictus 122.65 MB Repeat features C6/36 cell line strain GCA_001876365.2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-albopictus-Foshan_REPEATFEATURES_AaloF1.gff3.gz Aedes albopictus 135.86 MB Repeat features Foshan strain AaloF1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-albimanus_MSM-STATS_VB-2018-04.txt.gz Anopheles albimanus 786.42 KB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Anopheles-albimanus-STECLA_CHROMOSOMES_AalbS2.fa.gz Anopheles albimanus 49.47 MB Chromosomes STECLA strain genomic chromosomes sequences, AalbS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-albimanus-STECLA_SCAFFOLDS_AalbS2.fa.gz Anopheles albimanus 49.45 MB Scaffolds STECLA strain genomic scaffolds sequences, AalbS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-albimanus-STECLA_PEPTIDES_AalbS2.5.fa.gz Anopheles albimanus 4.37 MB Peptides STECLA strain peptide sequences, AalbS2.5 geneset.
Anopheles-albimanus-STECLA_TRANSCRIPTS_AalbS2.5.fa.gz Anopheles albimanus 7.74 MB Transcripts STECLA strain transcript sequences, AalbS2.5 geneset.
Anopheles-albimanus-STECLA_BASEFEATURES_AalbS2.5.gff3.gz Anopheles albimanus 1.76 MB Basefeatures STECLA strain AalbS2.5 geneset in GFF3 format.

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