Anopheles-sinensis-China_CONTIGS_AsinC2.fa.gz
Anopheles sinensis
64.74 MB
Contigs
China strain genomic contig sequences, AsinC2 assembly.
Anopheles-sinensis-SINENSIS_CONTIGS_AsinS2.fa.gz
Anopheles sinensis
57.48 MB
Contigs
SINENSIS strain genomic contig sequences, AsinS2 assembly.
Anopheles-sinensis-China_SCAFFOLDS_AsinC2.fa.gz
Anopheles sinensis
64.22 MB
Scaffolds
China strain genomic scaffolds sequences, AsinC2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-sinensis-SINENSIS_SCAFFOLDS_AsinS2.fa.gz
Anopheles sinensis
60.07 MB
Scaffolds
SINENSIS strain genomic scaffold sequences, AsinS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-sinensis-SINENSIS_PEPTIDES_AsinS2.5.fa.gz
Anopheles sinensis
3.85 MB
Peptides
SINENSIS strain peptide sequences, AsinS2.5 geneset.
Anopheles-sinensis-China_PEPTIDES_AsinC2.2.fa.gz
Anopheles sinensis
4.67 MB
Peptides
China strain peptide sequences, AsinC2.2 geneset.
Anopheles-sinensis-SINENSIS_TRANSCRIPTS_AsinS2.5.fa.gz
Anopheles sinensis
6.96 MB
Transcripts
SINENSIS strain transcript sequences, AsinS2.5 geneset.
Anopheles-sinensis-China_TRANSCRIPTS_AsinC2.2.fa.gz
Anopheles sinensis
7.02 MB
Transcripts
China strain transcript sequences, AsinC2.2 geneset.
Anopheles-sinensis-SINENSIS_BASEFEATURES_AsinS2.5.gff3.gz
Anopheles sinensis
2.03 MB
Basefeatures
SINENSIS strain AsinS2.5 geneset in GFF3 format.
Anopheles-sinensis-SINENSIS_BASEFEATURES_AsinS2.5.gtf.gz
Anopheles sinensis
1.53 MB
Basefeatures
SINENSIS strain AsinS2.5 geneset in GTF (v2.2) format.
Anopheles-sinensis-China_BASEFEATURES_AsinC2.2.gff3.gz
Anopheles sinensis
2.19 MB
Basefeatures
China strain AsinC2.2 geneset in GFF3 format.
Anopheles-sinensis-China_BASEFEATURES_AsinC2.2.gtf.gz
Anopheles sinensis
1.79 MB
Basefeatures
China strain AsinC2.2 geneset in GTF (v2.2) format.
Anopheles-sinensis-SINENSIS_CONTIG2SCAFFOLD_AsinS2.agp.gz
Anopheles sinensis
615.48 KB
Contig to Scaffold mapping
AGP (v2.0) file relating contigs to scaffolds for the Anopheles sinensis SINENSIS strain, AsinS2.1 assembly.
Anopheles-sinensis-China_CONTIG2SCAFFOLD_AsinC2.agp.gz
Anopheles sinensis
548.56 KB
Contig to Scaffold mapping
AGP (v2.0) file relating contigs to scaffolds for the Anopheles sinensis China strain, AsinC2.1 assembly.
Anopheles-sinensis-China_MAPPINGS_AsinC2.1-AsinC2.2.txt
Anopheles sinensis
15.77 KB
ID Mapping
Stable ID mapping between genesets AsinC2.1 and AsinC2.2 (RNA gene update)
Anopheles-sinensis-SINENSIS_MAPPINGS_AsinS2.1-AsinS2.2.txt
Anopheles sinensis
11.8 KB
ID Mapping
Stable ID mapping between genesets AsinS2.1 and AsinS2.2 (RNA gene update)
Anopheles-sinensis-SINENSIS_REPEATS.lib
Anopheles sinensis
20.64 KB
RepeatMasker library
RepeatMasker library file of repeats for Anopheles sinensis, SINENSIS strain.
Anopheles-sinensis-China_REPEATS.lib
Anopheles sinensis
424.99 KB
RepeatMasker library
RepeatMasker library file of repeats for Anopheles sinensis, China strain.
Anopheles-sinensis-China_REPEATFEATURES_AsinC2.gff3.gz
Anopheles sinensis
3.16 MB
Repeat features
China strain AsinC2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-sinensis-SINENSIS_REPEATFEATURES_AsinS2.gff3.gz
Anopheles sinensis
3.01 MB
Repeat features
SINENSIS strain AsinS2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_sinensis_unresolved_transcripts_2015_06.txt
Anopheles sinensis
5.5 KB
Transcript projection
The stable IDs of unprojected transcripts which fulfill the following criteria,
and thus represented credible genes on the old assembly:
* protein_features > 0
* orthologs...
anopheles_sinensis_projected_cdna_2015_06.fa
Anopheles sinensis
21.49 MB
Transcript projection
cDNA sequence (from the old assembly) of projected transcripts.
anopheles_sinensis_projected_cds_2015_06.fa
Anopheles sinensis
17.53 MB
Transcript projection
Coding sequence (from the old assembly) of projected transcripts.
anopheles_sinensis_projected_2015_06.gff3
Anopheles sinensis
8.61 MB
Transcript projection
Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_sinensis_projected_pep_2015_06.fa
Anopheles sinensis
6.05 MB
Transcript projection
Peptide sequence (from the old assembly) of projected transcripts.
anopheles_sinensis_README_2015_06.txt
Anopheles sinensis
7.38 KB
Transcript projection
In VectorBase release 1506, Anopheles sinensis genes were projected from
assembly version 1 (GCA_000472065.1) to assembly version 2 (GCA_000472065.2).
This README file describes...
anopheles_sinensis_report_2015_06.txt
Anopheles sinensis
2.75 MB
Transcript projection
Description of the fate of every transcript in the old assembly, along with
statistics to judge the quality and quantity of evidence.
Columns:
* transcript: stable ID
* status:...
anopheles_sinensis_summary_2015_06.txt
Anopheles sinensis
478 bytes
Transcript projection
A summary of the number of transcripts that could and could not be projected.
anopheles_sinensis_unprojected_cdna_2015_06.fa
Anopheles sinensis
3.59 MB
Transcript projection
cDNA sequence (from the old assembly) of unprojected transcripts.
anopheles_sinensis_unprojected_cds_2015_06.fa
Anopheles sinensis
3.19 MB
Transcript projection
Coding sequence (from the old assembly) of unprojected transcripts.
anopheles_sinensis_unprojected_2015_06.gff3
Anopheles sinensis
1.69 MB
Transcript projection
Unrojected (but partially mapped) transcripts (coordinates on the new assembly)
in GFF3 format.
anopheles_sinensis_unprojected_pep_2015_06.fa
Anopheles sinensis
1.12 MB
Transcript projection
Peptide sequence (from the old assembly) of unprojected transcripts.
Anopheles-sinensis_china_EXPR-STATS_VB-2019-02.txt.gz
Anopheles sinensis
499.39 KB
Expression statistics
Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.