Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 22 of 22
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File Organism Size Type Description
Anopheles-coluzzii-Ngousso_CHROMOSOMES_AcolN1.fa.gz Anopheles coluzzii 76.26 MB Chromosomes Ngousso strain genomic chromosomes sequences, AcolN1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-coluzzii-Mali-NIH_CONTIGS_AcolM1.fa.gz Anopheles coluzzii 62.26 MB Contigs Mali-NIH strain genomic contigs sequences, AcolM1 assembly.
Anopheles-coluzzii-Ngousso_SCAFFOLDS_AcolN1.fa.gz Anopheles coluzzii 76.25 MB Scaffolds Ngousso strain genomic scaffolds sequences, AcolN1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-coluzzii-Mali-NIH_SCAFFOLDS_AcolM1.fa.gz Anopheles coluzzii 65.08 MB Scaffolds Mali-NIH strain genomic scaffold sequences, AcolM1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-coluzzii-Ngousso_PEPTIDES_AcolN1.0.fa.gz Anopheles coluzzii 4.51 MB Peptides Ngousso strain peptide sequences, AcolN1.0 geneset.
Anopheles-coluzzii-Mali-NIH_PEPTIDES_AcolM1.8.fa.gz Anopheles coluzzii 4.28 MB Peptides Mali-NIH strain peptide sequences, AcolM1.8 geneset.
Anopheles-coluzzii-Ngousso_TRANSCRIPTS_AcolN1.0.fa.gz Anopheles coluzzii 6.97 MB Transcripts Ngousso strain transcript sequences, AcolN1.0 geneset.
Anopheles-coluzzii-Mali-NIH_TRANSCRIPTS_AcolM1.8.fa.gz Anopheles coluzzii 8.8 MB Transcripts Mali-NIH strain transcript sequences, AcolM1.8 geneset.
Anopheles-coluzzii-Ngousso_BASEFEATURES_AcolN1.0.gff3.gz Anopheles coluzzii 1.67 MB Basefeatures Ngousso strain AcolN1.0 geneset in GFF3 format.
Anopheles-coluzzii-Ngousso_BASEFEATURES_AcolN1.0.gtf.gz Anopheles coluzzii 1.64 MB Basefeatures Ngousso strain AcolN1.0 geneset in GTF (v2.2) format.
Anopheles-coluzzii-Mali-NIH_BASEFEATURES_AcolM1.8.gff3.gz Anopheles coluzzii 2.2 MB Basefeatures Mali-NIH strain AcolM1.8 geneset in GFF3 format.
Anopheles-coluzzii-Mali-NIH_BASEFEATURES_AcolM1.8.gtf.gz Anopheles coluzzii 1.76 MB Basefeatures Mali-NIH strain AcolM1.8 geneset in GTF (v2.2) format.
Anopheles-coluzzii-Mali-NIH_BAC-ENDS_Dec12.fa.gz Anopheles coluzzii 45.63 MB BAC ends Mali-NIH strain BAC end sequences from the NCBI trace archive as of December 2012.
Anopheles-coluzzii-Mali-NIH_CONTIG2SCAFFOLD_AcolM1.agp.gz Anopheles coluzzii 544.12 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles coluzzii Mali-NIH strain, AcolM1.2 assembly.
Anopheles-coluzzii-Ngousso_SCAFFOLD2CHROMOSOME_AcolN1.agp.gz Anopheles coluzzii 1.89 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles coluzzii Ngousso strain, AcolN1 assembly.
Anopheles-coluzzii-Mali-NIH_MAPPINGS_AcolM1.3-AcolM1.4.txt Anopheles coluzzii 18.97 KB ID Mapping Stable ID mapping between genesets AcolM1.3 and AcolM1.4 (RNA gene update)
Anopheles-coluzzii-Mali-NIH_REPEATS.lib Anopheles coluzzii 495.2 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles coluzzii, MALI-NIH strain.
Anopheles-coluzzii-Ngousso_NONREFREPEATFEATURES_AcolN1.gff3.gz Anopheles coluzzii 3 MB Repeat features Ngousso strain AcolN1 repeat features (RepeatMasker, Dust, TRF) for non_ref_scaffolds in GFF3 format.
Anopheles-coluzzii-Ngousso_REPEATFEATURES_AcolN1.gff3.gz Anopheles coluzzii 8.94 MB Repeat features Ngousso strain AcolN1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-coluzzii-Mali-NIH_REPEATFEATURES_AcolM1.gff3.gz Anopheles coluzzii 4.77 MB Repeat features Mali-NIH strain AcolM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-coluzzii_EXPR-STATS_VB-2019-06.txt.gz Anopheles coluzzii 5.05 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-coluzzii-Ngousso_NONREFSCAFFOLDS_AcolN1.fa.gz Anopheles coluzzii 26.96 MB Ngousso strain genomic nonrefscaffolds sequences, AcolN1 assembly, softmasked using RepeatMasker, Dust, and TRF.