Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 10 of 10
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Operations
File Organism Size Type Description
Sarcoptes-scabiei-Arlian_CONTIGS_SscaA1.fa.gz Sarcoptes scabiei 16.71 MB Contigs Arlian strain genomic contigs sequences, SscaA1 assembly.
Sarcoptes-scabiei-Arlian_SCAFFOLDS_SscaA1.fa.gz Sarcoptes scabiei 16.71 MB Scaffolds Arlian strain genomic scaffolds sequences, SscaA1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Sarcoptes-scabiei-Arlian_PEPTIDES_SscaA1.2.fa.gz Sarcoptes scabiei 2.66 MB Peptides Arlian strain peptide sequences, SscaA1.2 geneset.
Sarcoptes-scabiei-Arlian_TRANSCRIPTS_SscaA1.2.fa.gz Sarcoptes scabiei 4.03 MB Transcripts Arlian strain transcript sequences, SscaA1.2 geneset.
Sarcoptes-scabiei-Arlian_BASEFEATURES_SscaA1.2.gff3.gz Sarcoptes scabiei 1.68 MB Basefeatures Arlian strain SscaA1.2 geneset in GFF3 format.
Sarcoptes-scabiei-Arlian_BASEFEATURES_SscaA1.2.gtf.gz Sarcoptes scabiei 1.02 MB Basefeatures Arlian strain SscaA1.2 geneset in GTF (v2.2) format.
Sarcoptes-scabiei-Arlian_CONTIG2SCAFFOLD_SscaA1.agp.gz Sarcoptes scabiei 155.79 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Sarcoptes scabiei Arlian strain, SscaA1 assembly.
Sarcoptes-scabiei-var-canis-Arlian_MAPPINGS_SscaA1.1-SscaA1.2.txt Sarcoptes scabiei 6.19 KB ID Mapping Stable ID mapping between genesets SscaA1.1 and SscaA1.2 (RNA gene update)
Sarcoptes-scabiei-Arlian_REPEATS.lib Sarcoptes scabiei 7.45 KB RepeatMasker library RepeatMasker library file of repeats for Sarcoptes scabiei, Arlian strain.
Sarcoptes-scabiei-Arlian_REPEATFEATURES_SscaA1.gff3.gz Sarcoptes scabiei 3.27 MB Repeat features Arlian strain SscaA1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.