Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 11 of 11
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Operations
File Organism Size Type Description
Cimex-lectularius-Harlan_CONTIGS_ClecH1.fa.gz Cimex lectularius 149.89 MB Contigs Harlan strain genome contig sequences, ClecH1 assembly.
Cimex-lectularius-Harlan_SCAFFOLDS_ClecH1.fa.gz Cimex lectularius 151.73 MB Scaffolds Harlan strain genome scaffold sequences, ClecH1 assembly.
Cimex-lectularius-Harlan_PEPTIDES_ClecH1.3.fa.gz Cimex lectularius 3.58 MB Peptides Harlan strain peptide sequences, ClecH1.3 geneset.
Cimex-lectularius-Harlan_TRANSCRIPTS_ClecH1.3.fa.gz Cimex lectularius 8.89 MB Transcripts Harlan strain transcript sequences, ClecH1.3 geneset.
Cimex-lectularius-Harlan_BASEFEATURES_ClecH1.3.gff3.gz Cimex lectularius 2.35 MB Basefeatures Harlan strain ClecH1.3 geneset in GFF3 format.
Cimex-lectularius-Harlan_BASEFEATURES_ClecH1.3.gtf.gz Cimex lectularius 2.2 MB Basefeatures Harlan strain ClecH1.3 geneset in GTF (v2.2) format.
Cimex-lectularius-Harlan_CONTIG2SCAFFOLD_ClecH1.agp.gz Cimex lectularius 1.16 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Cimex lectularius Harlan strain, ClecH1 assembly.
Cimex-lectularius-Harlan_MAPPINGS_ClecH1.2-ClecH1.3.txt Cimex lectularius 62.26 KB ID Mapping Stable ID mapping between genesets ClecH1.2 and ClecH1.3 (RNA gene update)
Cimex-lectularius-Harlan_REPEATS.lib Cimex lectularius 2.57 MB RepeatMasker library RepeatMasker library file of repeats for Cimex lectularius, Harlan strain.
Cimex-lectularius-Harlan_REPEATFEATURES_ClecH1.gff3.gz Cimex lectularius 13.85 MB Repeat features Harlan strain ClecH1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Cimex-lectularius_EXPR-STATS_VB-2018-12.txt.gz Cimex lectularius 709.71 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.