Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 29 of 29
Double-click species to show assemblies
Operations
File Organism Size Type Description
Ixodes-scapularis-Wikel_SCAFFOLDLOOKUP_IscaW1.0.txt.gz Ixodes scapularis 2.17 MB Genome VectorBase ID to GenBank accession mappings.
iscapularis.SINGLETONS-Wikel.i3.fa.gz Ixodes scapularis 1.06 GB Genome Wikel strain Singleton sequences, not included included in the IscaW1 assembly.
Ixodes-scapularis-ISE6_CONTIGS_IscaI1.fa.gz Ixodes scapularis 954.06 MB Contigs ISE6 strain genomic contigs sequences, IscaI1 assembly.
Ixodes-scapularis-Wikel_CONTIGS_IscaW1.fa.gz Ixodes scapularis 451.68 MB Contigs Wikel strain genomic contig sequences, IscaW1 assembly.
Ixodes-scapularis-ISE6_SCAFFOLDS_IscaI1.fa.gz Ixodes scapularis 645.79 MB Scaffolds ISE6 strain genomic scaffolds sequences, IscaI1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Ixodes-scapularis-Wikel_SCAFFOLDS_IscaW1.fa.gz Ixodes scapularis 460.74 MB Scaffolds Wikel strain genomic supercontig sequences, IscaW1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Ixodes-scapularis-ISE6_PEPTIDES_IscaI1.0.fa.gz Ixodes scapularis 3.55 MB Peptides ISE6 strain peptide sequences, IscaI1.0 geneset.
Ixodes-scapularis-Wikel_PEPTIDES_IscaW1.6.fa.gz Ixodes scapularis 3.98 MB Peptides Wikel strain peptide sequences, IscaW1.6 geneset.
Ixodes-scapularis-ISE6_TRANSCRIPTS_IscaI1.0.fa.gz Ixodes scapularis 5.39 MB Transcripts ISE6 strain transcript sequences, IscaI1.0 geneset.
Ixodes-scapularis-Wikel_TRANSCRIPTS_IscaW1.6.fa.gz Ixodes scapularis 6.63 MB Transcripts Wikel strain transcript sequences, IscaW1.6 geneset.
Ixodes-scapularis-ISE6_BASEFEATURES_IscaI1.0.gff3.gz Ixodes scapularis 2.97 MB Basefeatures ISE6 strain IscaI1.0 geneset in GFF3 format.
Ixodes-scapularis-ISE6_BASEFEATURES_IscaI1.0.gtf.gz Ixodes scapularis 2.42 MB Basefeatures ISE6 strain IscaI1.0 geneset in GTF (v2.2) format.
Ixodes-scapularis-Wikel_BASEFEATURES_IscaW1.6.gff3.gz Ixodes scapularis 9.82 MB Basefeatures Wikel strain IscaW1.6 geneset in GFF3 format.
Ixodes-scapularis-Wikel_BASEFEATURES_IscaW1.6.gtf.gz Ixodes scapularis 2.61 MB Basefeatures Wikel strain IscaW1.6 geneset in GTF (v2.2) format.
Ixodes-scapularis_EST-CLIPPED_2012-12.fa.gz Ixodes scapularis 45.69 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Ixodes-scapularis_EST-RAW_2012-12.fa.gz Ixodes scapularis 46.11 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Ixodes-scapularis-Wikel_TSA_GBBN01.fa.gz Ixodes scapularis 6.07 MB Assembled transcriptome TSA:GBBN00000000.1 from female synganglion
Ixodes-scapularis-Wikel_BAC-ENDS_2012-12.fa.gz Ixodes scapularis 172.2 MB BAC ends Wikel strain BAC end sequences from the NCBI trace archive as of December 2012.
Ixodes-scapularis-ISE6_CONTIG2SCAFFOLD_IscaI1.agp.gz Ixodes scapularis 73.6 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Ixodes scapularis ISE6 strain, IscaI1 assembly.
Ixodes-scapularis-Wikel_CONTIG2SCAFFOLD_IscaW1.agp.gz Ixodes scapularis 10.07 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Ixodes scapularis Wikel strain, IscaW1 assembly.
Ixodes-scapularis-Wikel_MAPPINGS_IscaW1.4-IscaW1.5.txt Ixodes scapularis 136.18 KB ID Mapping Stable ID mapping between genesets IscaW1.4 and IscaW1.5 (RNA gene update)
Ixodes-scapularis-Wikel_MODIFICATIONS_IscaW1.2-IscaW1.3-ncRNA.txt Ixodes scapularis 332.02 KB ID Mapping Wikel strain gene prediction stable identifier mapping for ncRNAs from IscaW1.2 to IscaW1.3.
Ixodes-scapularis-Wikel_REPEATS.lib Ixodes scapularis 12.4 MB RepeatMasker library RepeatMasker library file of repeats for Ixodes scapularis, Wikel strain.
Ixodes-scapularis-ISE6_NONREFREPEATFEATURES_IscaI1.gff3.gz Ixodes scapularis 59.28 MB Repeat features ISE6 strain IscaI1 repeat features (RepeatMasker, Dust, TRF) for non_ref_scaffolds in GFF3 format.
Ixodes-scapularis-ISE6_REPEATFEATURES_IscaI1.gff3.gz Ixodes scapularis 125.22 MB Repeat features ISE6 strain IscaI1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Ixodes-scapularis-Wikel_REPEATFEATURES_IscaW1.gff3.gz Ixodes scapularis 77.16 MB Repeat features Wikel strain IscaW1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Ixodes_scapularis_TEs_version_1.0.txt Ixodes scapularis 3.37 MB Transposable elements Ixodes scapularis TEs (transposable elements) version 1.0 This file contains fasta sequences of TEs combined from sequences provided from different groups. The methods/criteria...
Ixodes-scapularis_EXPR-STATS_VB-2019-06.txt.gz Ixodes scapularis 1.75 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Ixodes-scapularis-ISE6_NONREFSCAFFOLDS_IscaI1.fa.gz Ixodes scapularis 308.47 MB ISE6 strain genomic nonrefscaffolds sequences, IscaI1 assembly, softmasked using RepeatMasker, Dust, and TRF.