Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 11 of 11
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Operations
File Organism Size Type Description
Glossina-palpalis-IAEA_CONTIGS_GpapI1.fa.gz Glossina palpalis 108.03 MB Contigs IAEA strain genomic contigs sequences, GpapI1 assembly.
Glossina-palpalis-IAEA_SCAFFOLDS_GpapI1.fa.gz Glossina palpalis 102.81 MB Scaffolds IAEA strain genomic scaffold sequences, GpapI1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Glossina-palpalis-IAEA_PEPTIDES_GpapI1.4.fa.gz Glossina palpalis 5.21 MB Peptides IAEA strain peptide sequences, GpapI1.4 geneset.
Glossina-palpalis-IAEA_TRANSCRIPTS_GpapI1.4.fa.gz Glossina palpalis 13.82 MB Transcripts IAEA strain transcript sequences, GpapI1.4 geneset.
Glossina-palpalis-IAEA_BASEFEATURES_GpapI1.4.gff3.gz Glossina palpalis 3.01 MB Basefeatures IAEA strain GpapI1.4 geneset in GFF3 format.
Glossina-palpalis-IAEA_BASEFEATURES_GpapI1.4.gtf.gz Glossina palpalis 2.58 MB Basefeatures IAEA strain GpapI1.4 geneset in GTF (v2.2) format.
Glossina-palpalis-IAEA_CONTIG2SCAFFOLD_GpapI1.agp.gz Glossina palpalis 755.77 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina palpalis IAEA strain, GpapI1.0 assembly.
Glossina-palpalis-IAEA_MAPPINGS_GpapI1.1-GpapI1.2.txt Glossina palpalis 22.92 KB ID Mapping Stable ID mapping between genesets GpapI1.1 and GpapI1.2 (RNA gene update)
Glossina-palpalis-IAEA_REPEATS.lib Glossina palpalis 1.3 MB RepeatMasker library RepeatMasker library file of repeats for Glossina palpalis, IAEA strain.
Glossina-palpalis-IAEA_REPEATFEATURES_GpapI1.gff3.gz Glossina palpalis 17.43 MB Repeat features IAEA strain GpapI1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Glossina-palpalis_EXPR-STATS_VB-2019-06.txt.gz Glossina palpalis 957.89 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.