Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 12 of 12
Double-click species to show assemblies
Operations
 File Organism Size Type Description
Anopheles-arabiensis-Dongola_CONTIGS_AaraD1.fa.gz Anopheles arabiensis 65.1 MB Contigs Dongola strain genomic contig sequences, AaraD1 assembly.
Anopheles-arabiensis-Dongola_SCAFFOLDS_AaraD1.fa.gz Anopheles arabiensis 65.25 MB Scaffolds Dongola strain genomic scaffold sequences, AaraD1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-arabiensis-Dongola_PEPTIDES_AaraD1.9.fa.gz Anopheles arabiensis 4.55 MB Peptides Dongola strain peptide sequences, AaraD1.9 geneset.
Anopheles-arabiensis-Dongola_TRANSCRIPTS_AaraD1.9.fa.gz Anopheles arabiensis 9.11 MB Transcripts Dongola strain transcript sequences, AaraD1.9 geneset.
Anopheles-arabiensis-Dongola_BASEFEATURES_AaraD1.9.gff3.gz Anopheles arabiensis 2.08 MB Basefeatures Dongola strain AaraD1.9 geneset in GFF3 format.
Anopheles-arabiensis-Dongola_BASEFEATURES_AaraD1.9.gtf.gz Anopheles arabiensis 1.73 MB Basefeatures Dongola strain AaraD1.9 geneset in GTF (v2.2) format.
Anopheles-arabiensis-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles arabiensis 3.04 MB Assembled transcriptome 72049 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-arabiensis-Dongola_CONTIG2SCAFFOLD_AaraD1.agp.gz Anopheles arabiensis 258.12 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles arabiensis Dongola strain, AaraD1 assembly.
Anopheles-arabiensis-Dongola_MAPPINGS_AaraD1.4-AaraD1.5.txt Anopheles arabiensis 10.82 KB ID Mapping Stable ID mapping between genesets AaraD1.4 and AaraD1.5 (RNA gene update)
Anopheles-arabiensis-Dongola_REPEATS.lib Anopheles arabiensis 323.53 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles arabiensis, Dongola strain.
Anopheles-arabiensis-Dongola_REPEATFEATURES_AaraD1.gff3.gz Anopheles arabiensis 4.73 MB Repeat features Dongola strain AaraD1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-arabiensis_EXPR-STATS_VB-2018-12.txt.gz Anopheles arabiensis 816.26 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.