Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 12 of 12
Double-click species to show assemblies
Operations
File Organism Size Type Description
Anopheles-funestus-FUMOZ_CONTIGS_AfunF1.fa.gz Anopheles funestus 57.63 MB Contigs FUMOZ strain genomic contig sequences, AfunF1 assembly.
Anopheles-funestus-FUMOZ_SCAFFOLDS_AfunF1.fa.gz Anopheles funestus 57.93 MB Scaffolds FUMOZ strain genomic scaffold sequences, AfunF1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-funestus-FUMOZ_PEPTIDES_AfunF1.10.fa.gz Anopheles funestus 4.51 MB Peptides FUMOZ strain peptide sequences, AfunF1.10 geneset.
Anopheles-funestus-FUMOZ_TRANSCRIPTS_AfunF1.10.fa.gz Anopheles funestus 8.53 MB Transcripts FUMOZ strain transcript sequences, AfunF1.10 geneset.
Anopheles-funestus-FUMOZ_BASEFEATURES_AfunF1.10.gff3.gz Anopheles funestus 2 MB Basefeatures FUMOZ strain AfunF1.10 geneset in GFF3 format.
Anopheles-funestus-FUMOZ_BASEFEATURES_AfunF1.10.gtf.gz Anopheles funestus 1.69 MB Basefeatures FUMOZ strain AfunF1.10 geneset in GTF (v2.2) format.
Anopheles-funestus-Crawford_TRANSCRIPTOME_1.0.fa.gz Anopheles funestus 5.79 MB Assembled transcriptome 15527 assembled RNAseq transcripts generated by Crawford et al. (2010)
Anopheles-funestus-FUMOZ_CONTIG2SCAFFOLD_AfunF1.agp.gz Anopheles funestus 238.95 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles funestus FUMOZ strain, AfunF1 assembly.
Anopheles-funestus-FUMOZ_MAPPINGS_AfunF1.4-AfunF1.5.txt Anopheles funestus 7.56 KB ID Mapping Stable ID mapping between genesets AfunF1.4 and AfunF1.5 (RNA gene update)
Anopheles-funestus-FUMOZ_REPEATS.lib Anopheles funestus 161.21 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles funestus, FUMOZ strain.
Anopheles-funestus-FUMOZ_REPEATFEATURES_AfunF1.gff3.gz Anopheles funestus 3.36 MB Repeat features FUMOZ strain AfunF1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-funestus_EXPR-STATS_VB-2019-04.txt.gz Anopheles funestus 233.54 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.