Anopheles-gambiae-PEST_CHROMOSOMES_AgamP4.fa.gz
Anopheles gambiae
76.01 MB
Chromosomes
PEST strain chromosome arm sequences, AgamP4 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-Pimperena_CONTIGS_AgamS1.fa.gz
Anopheles gambiae
70.35 MB
Contigs
Pimperena strain genomic contigs sequences, AgamS1 assembly.
Anopheles-gambiae-Pimperena_SCAFFOLDS_AgamS1.fa.gz
Anopheles gambiae
69.82 MB
Scaffolds
Pimperena strain genomic scaffolds sequences, AgamS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-PEST_SCAFFOLDS_AgamP4.fa.gz
Anopheles gambiae
78.81 MB
Scaffolds
PEST strain genomic scaffold sequences, AgamP4 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-Pimperena_Y-sequences_2016.fa.gz
Anopheles gambiae
52.26 MB
Reads
Error-correct PacBio reads generated from Anopheles gambiae Pimperena males predicted to be Y-linked by the chromosome quotient (CQ) method. Also known as Ydb from Hall et al.
Anopheles-gambiae-Pimperena_TRACE_2007-05.fa.gz
Anopheles gambiae
790.34 MB
Reads
Pimperena strain submitted trace reads as of May 2007.
Anopheles-gambiae-PEST_PEPTIDES_AgamP4.12.fa.gz
Anopheles gambiae
4.73 MB
Peptides
PEST strain peptide sequences, AgamP4.12 geneset.
Anopheles-gambiae-PEST_TRANSCRIPTS_AgamP4.12.fa.gz
Anopheles gambiae
10.88 MB
Transcripts
PEST strain transcript sequences, AgamP4.12 geneset.
Anopheles-gambiae-PEST_BASEFEATURES_AgamP4.12.gff3.gz
Anopheles gambiae
2.57 MB
Basefeatures
PEST strain AgamP4.12 geneset in GFF3 format.
Anopheles-gambiae-PEST_BASEFEATURES_AgamP4.12.gtf.gz
Anopheles gambiae
1.97 MB
Basefeatures
PEST strain AgamP4.12 geneset in GTF (v2.2) format.
Anopheles-gambiae_EST-CLIPPED_2012-12.fa.gz
Anopheles gambiae
45.23 MB
ESTs
Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Anopheles-gambiae_EST-RAW_2012-12.fa.gz
Anopheles gambiae
45.32 MB
Raw
Publicly submitted EST/cDNAs as of December 2012.
Anopheles-gambiae-Pimperena_BAC-ENDS_2012-12.fa.gz
Anopheles gambiae
22.79 MB
BAC ends
Pimperena strain BAC end sequences from the NCBI trace archive as of December 2012.
Anopheles-gambiae-Pimperena_CONTIG2SCAFFOLD_AgamS1.agp.gz
Anopheles gambiae
452.53 KB
Contig to Scaffold mapping
AGP (v2.0) file relating contigs to scaffolds for the Anopheles gambiae Pimperena strain, AgamS1 assembly.
Anopheles-gambiae-PEST_SCAFFOLD2CHROMOSOME_AgamP4.agp.gz
Anopheles gambiae
182.13 KB
Scaffold to Chromosome mapping
AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles gambiae PEST strain, AgamP4 assembly.
Anopheles-gambiae-PEST_MAPPINGS_AgamP4.4-AgamP4.5.txt
Anopheles gambiae
31.85 KB
ID Mapping
Stable ID mapping between genesets AgamP4.4 and AgamP4.5 (RNA gene update)
Anopheles-gambiae-PEST_MODIFICATIONS_AgamP3.8-AgamP4.1-ncRNA.txt
Anopheles gambiae
60.59 KB
ID Mapping
PEST strain gene prediction stable identifier mapping for ncRNAs from AgamP3.8 to AgamP4.1.
Anopheles-gambiae-PEST_REPEATS.lib
Anopheles gambiae
8.69 MB
RepeatMasker library
RepeatMasker library file of repeats for Anopheles gambiae, PEST strain.
Anopheles-gambiae-PEST_REPEATFEATURES_AgamP4.gff3.gz
Anopheles gambiae
6.1 MB
Repeat features
PEST strain AgamP4 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae-Pimperena_REPEATFEATURES_AgamS1.gff3.gz
Anopheles gambiae
6.76 MB
Repeat features
Pimperena strain AgamS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae_EXPR-STATS_VB-2019-06.txt.gz
Anopheles gambiae
46.97 MB
Expression statistics
Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.