Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 21 of 21
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Operations
File Organism Size Type Description
Anopheles-gambiae-PEST_CHROMOSOMES_AgamP4.fa.gz Anopheles gambiae 76.01 MB Chromosomes PEST strain chromosome arm sequences, AgamP4 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-Pimperena_CONTIGS_AgamS1.fa.gz Anopheles gambiae 70.35 MB Contigs Pimperena strain genomic contigs sequences, AgamS1 assembly.
Anopheles-gambiae-Pimperena_SCAFFOLDS_AgamS1.fa.gz Anopheles gambiae 69.82 MB Scaffolds Pimperena strain genomic scaffolds sequences, AgamS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-PEST_SCAFFOLDS_AgamP4.fa.gz Anopheles gambiae 78.81 MB Scaffolds PEST strain genomic scaffold sequences, AgamP4 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-Pimperena_Y-sequences_2016.fa.gz Anopheles gambiae 52.26 MB Reads Error-correct PacBio reads generated from Anopheles gambiae Pimperena males predicted to be Y-linked by the chromosome quotient (CQ) method. Also known as Ydb from Hall et al.
Anopheles-gambiae-Pimperena_TRACE_2007-05.fa.gz Anopheles gambiae 790.34 MB Reads Pimperena strain submitted trace reads as of May 2007.
Anopheles-gambiae-PEST_PEPTIDES_AgamP4.10.fa.gz Anopheles gambiae 4.58 MB Peptides PEST strain peptide sequences, AgamP4.10 geneset.
Anopheles-gambiae-PEST_TRANSCRIPTS_AgamP4.10.fa.gz Anopheles gambiae 8.46 MB Transcripts PEST strain transcript sequences, AgamP4.10 geneset.
Anopheles-gambiae-PEST_BASEFEATURES_AgamP4.10.gff3.gz Anopheles gambiae 2.49 MB Basefeatures PEST strain AgamP4.10 geneset in GFF3 format.
Anopheles-gambiae-PEST_BASEFEATURES_AgamP4.10.gtf.gz Anopheles gambiae 1.84 MB Basefeatures PEST strain AgamP4.10 geneset in GTF (v2.2) format.
Anopheles-gambiae_EST-CLIPPED_2012-12.fa.gz Anopheles gambiae 45.23 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Anopheles-gambiae_EST-RAW_2012-12.fa.gz Anopheles gambiae 45.32 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Anopheles-gambiae-Pimperena_BAC-ENDS_2012-12.fa.gz Anopheles gambiae 22.79 MB BAC ends Pimperena strain BAC end sequences from the NCBI trace archive as of December 2012.
Anopheles-gambiae-Pimperena_CONTIG2SCAFFOLD_AgamS1.agp.gz Anopheles gambiae 452.53 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles gambiae Pimperena strain, AgamS1 assembly.
Anopheles-gambiae-PEST_SCAFFOLD2CHROMOSOME_AgamP4.agp.gz Anopheles gambiae 182.13 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles gambiae PEST strain, AgamP4 assembly.
Anopheles-gambiae-PEST_MAPPINGS_AgamP4.4-AgamP4.5.txt Anopheles gambiae 31.85 KB ID Mapping Stable ID mapping between genesets AgamP4.4 and AgamP4.5 (RNA gene update)
Anopheles-gambiae-PEST_MODIFICATIONS_AgamP3.8-AgamP4.1-ncRNA.txt Anopheles gambiae 60.59 KB ID Mapping PEST strain gene prediction stable identifier mapping for ncRNAs from AgamP3.8 to AgamP4.1.
Anopheles-gambiae-PEST_REPEATS.lib Anopheles gambiae 8.69 MB RepeatMasker library RepeatMasker library file of repeats for Anopheles gambiae, PEST strain.
Anopheles-gambiae-PEST_REPEATFEATURES_AgamP4.gff3.gz Anopheles gambiae 6.1 MB Repeat features PEST strain AgamP4 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae-Pimperena_REPEATFEATURES_AgamS1.gff3.gz Anopheles gambiae 6.76 MB Repeat features Pimperena strain AgamS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae_EXPR-STATS_VB-2018-12.txt.gz Anopheles gambiae 47.4 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.