Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 27 of 27
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Operations
 File Organism Size Type Description
Anopheles-stephensi-Indian_CONTIGS_AsteI2.fa.gz Anopheles stephensi 63.2 MB Contigs Indian strain genomic contig sequences, AsteI2 assembly.
Anopheles-stephensi-SDA-500_CONTIGS_AsteS1.fa.gz Anopheles stephensi 60.01 MB Contigs SDA-500 strain genomic contig sequences, AsteS1 assembly.
Anopheles-stephensi-Indian_SCAFFOLDS_AsteI2.fa.gz Anopheles stephensi 63.23 MB Scaffolds Indian strain genomic scaffold sequences, AsteI2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-stephensi-SDA-500_SCAFFOLDS_AsteS1.fa.gz Anopheles stephensi 59.14 MB Scaffolds SDA-500 strain genomic scaffolds sequences, AsteS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-stephensi-SDA-500_PEPTIDES_AsteS1.7.fa.gz Anopheles stephensi 4.45 MB Peptides SDA-500 strain peptide sequences, AsteS1.7 geneset.
Anopheles-stephensi-Indian_PEPTIDES_AsteI2.3.fa.gz Anopheles stephensi 4.13 MB Peptides Indian strain peptide sequences, AsteI2.3 geneset.
Anopheles-stephensi-SDA-500_TRANSCRIPTS_AsteS1.7.fa.gz Anopheles stephensi 7.97 MB Transcripts SDA-500 strain transcript sequences, AsteS1.7 geneset.
Anopheles-stephensi-Indian_TRANSCRIPTS_AsteI2.3.fa.gz Anopheles stephensi 6.31 MB Transcripts Indian strain transcript sequences, AsteI2.3 geneset.
Anopheles-stephensi-SDA-500_BASEFEATURES_AsteS1.7.gff3.gz Anopheles stephensi 1.88 MB Basefeatures SDA-500 strain AsteS1.7 geneset in GFF3 format.
Anopheles-stephensi-SDA-500_BASEFEATURES_AsteS1.7.gtf.gz Anopheles stephensi 1.63 MB Basefeatures SDA-500 strain AsteS1.7 geneset in GTF (v2.2) format.
Anopheles-stephensi-Indian_BASEFEATURES_AsteI2.3.gff3.gz Anopheles stephensi 1.8 MB Basefeatures Indian strain AsteI2.3 geneset in GFF3 format.
Anopheles-stephensi-Indian_BASEFEATURES_AsteI2.3.gtf.gz Anopheles stephensi 1.37 MB Basefeatures Indian strain AsteI2.3 geneset in GTF (v2.2) format.
Anopheles-stephensi_EST-CLIPPED_2012-12.fa.gz Anopheles stephensi 1.88 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Anopheles-stephensi_EST-RAW_2012-12.fa.gz Anopheles stephensi 2.15 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Anopheles-stephensi-Indian_TSA_GBVY01.fa.gz Anopheles stephensi 935.25 KB Assembled transcriptome TSA:GBVY00000000.1 from adult female midgut
Anopheles-stephensi-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles stephensi 2.7 MB Assembled transcriptome 61734 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-stephensi-SDA-500_CONTIG2SCAFFOLD_AsteS1.agp.gz Anopheles stephensi 221.19 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles stephensi SDA-500 strain, AsteS1 assembly.
Anopheles-stephensi-Indian_CONTIG2SCAFFOLD_AsteI2.agp.gz Anopheles stephensi 344 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles stephensi Indian strain, AsteI2.2 assembly.
Anopheles-stephensi-SDA-500_CONTIG2SCAFFOLD_AsteS1.agp.gz Anopheles stephensi 217.57 KB Contig to Scaffold mapping AGP file relating contigs to scaffolds for the Anopheles stephensi SDA-500 strain, AsteS1 assembly.
Anopheles-stephensi-Indian_MAPPINGS_AsteI2.2-AsteI2.3.txt Anopheles stephensi 15.09 KB ID Mapping Stable ID mapping between genesets AsteI2.2 and AsteI2.3 (RNA gene update)
Anopheles-stephensi-SDA-500_MAPPINGS_AsteS1.3-AsteS1.4.txt Anopheles stephensi 18.3 KB ID Mapping Stable ID mapping between genesets AsteS1.3 and AsteS1.4 (RNA gene update)
Anopheles_stephensi_MAPPINGS_AsteS1.2_AsteI2.2.txt Anopheles stephensi 688.95 KB ID Mapping Bidirectional mapping of transcript stable identifiers between the SDA-500 and Indian strains, genesets AsteS1.2 and AsteI2.2. The mapping is based on a projection between the...
Anopheles-stephensi-Indian_REPEATS.lib Anopheles stephensi 202.47 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles stephensi, Indian strain.
Anopheles-stephensi-SDA-500_REPEATS.lib Anopheles stephensi 153.24 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles stephensi, SDA-500 strain.
Anopheles-stephensi-Indian_REPEATFEATURES_AsteI2.gff3.gz Anopheles stephensi 1.53 MB Repeat features Indian strain AsteI2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-stephensi-SDA-500_REPEATFEATURES_AsteS1.gff3.gz Anopheles stephensi 3.41 MB Repeat features SDA-500 strain AsteS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-stephensi_indian_EXPR-STATS_VB-2018-12.txt.gz Anopheles stephensi 334.97 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.