Anopheles-stephensi-Indian_CONTIGS_AsteI2.fa.gz
Anopheles stephensi
63.2 MB
Contigs
Indian strain genomic contig sequences, AsteI2 assembly.
Anopheles-stephensi-SDA-500_CONTIGS_AsteS1.fa.gz
Anopheles stephensi
60.01 MB
Contigs
SDA-500 strain genomic contig sequences, AsteS1 assembly.
Anopheles-stephensi-Indian_SCAFFOLDS_AsteI2.fa.gz
Anopheles stephensi
63.23 MB
Scaffolds
Indian strain genomic scaffold sequences, AsteI2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-stephensi-SDA-500_SCAFFOLDS_AsteS1.fa.gz
Anopheles stephensi
59.14 MB
Scaffolds
SDA-500 strain genomic scaffolds sequences, AsteS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-stephensi-SDA-500_PEPTIDES_AsteS1.7.fa.gz
Anopheles stephensi
4.45 MB
Peptides
SDA-500 strain peptide sequences, AsteS1.7 geneset.
Anopheles-stephensi-Indian_PEPTIDES_AsteI2.3.fa.gz
Anopheles stephensi
4.13 MB
Peptides
Indian strain peptide sequences, AsteI2.3 geneset.
Anopheles-stephensi-SDA-500_TRANSCRIPTS_AsteS1.7.fa.gz
Anopheles stephensi
7.97 MB
Transcripts
SDA-500 strain transcript sequences, AsteS1.7 geneset.
Anopheles-stephensi-Indian_TRANSCRIPTS_AsteI2.3.fa.gz
Anopheles stephensi
6.31 MB
Transcripts
Indian strain transcript sequences, AsteI2.3 geneset.
Anopheles-stephensi-SDA-500_BASEFEATURES_AsteS1.7.gff3.gz
Anopheles stephensi
1.88 MB
Basefeatures
SDA-500 strain AsteS1.7 geneset in GFF3 format.
Anopheles-stephensi-SDA-500_BASEFEATURES_AsteS1.7.gtf.gz
Anopheles stephensi
1.63 MB
Basefeatures
SDA-500 strain AsteS1.7 geneset in GTF (v2.2) format.
Anopheles-stephensi-Indian_BASEFEATURES_AsteI2.3.gff3.gz
Anopheles stephensi
1.8 MB
Basefeatures
Indian strain AsteI2.3 geneset in GFF3 format.
Anopheles-stephensi-Indian_BASEFEATURES_AsteI2.3.gtf.gz
Anopheles stephensi
1.37 MB
Basefeatures
Indian strain AsteI2.3 geneset in GTF (v2.2) format.
Anopheles-stephensi_EST-CLIPPED_2012-12.fa.gz
Anopheles stephensi
1.88 MB
ESTs
Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Anopheles-stephensi_EST-RAW_2012-12.fa.gz
Anopheles stephensi
2.15 MB
Raw
Publicly submitted EST/cDNAs as of December 2012.
Anopheles-stephensi-Indian_TSA_GBVY01.fa.gz
Anopheles stephensi
935.25 KB
Assembled transcriptome
TSA:GBVY00000000.1 from adult female midgut
Anopheles-stephensi-Hittinger_TRANSCRIPTOME_1.0.fa.gz
Anopheles stephensi
2.7 MB
Assembled transcriptome
61734 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-stephensi-SDA-500_CONTIG2SCAFFOLD_AsteS1.agp.gz
Anopheles stephensi
221.19 KB
Contig to Scaffold mapping
AGP (v2.0) file relating contigs to scaffolds for the Anopheles stephensi SDA-500 strain, AsteS1 assembly.
Anopheles-stephensi-Indian_CONTIG2SCAFFOLD_AsteI2.agp.gz
Anopheles stephensi
344 KB
Contig to Scaffold mapping
AGP (v2.0) file relating contigs to scaffolds for the Anopheles stephensi Indian strain, AsteI2.2 assembly.
Anopheles-stephensi-SDA-500_CONTIG2SCAFFOLD_AsteS1.agp.gz
Anopheles stephensi
217.57 KB
Contig to Scaffold mapping
AGP file relating contigs to scaffolds for the Anopheles stephensi SDA-500 strain, AsteS1 assembly.
Anopheles-stephensi-Indian_MAPPINGS_AsteI2.2-AsteI2.3.txt
Anopheles stephensi
15.09 KB
ID Mapping
Stable ID mapping between genesets AsteI2.2 and AsteI2.3 (RNA gene update)
Anopheles-stephensi-SDA-500_MAPPINGS_AsteS1.3-AsteS1.4.txt
Anopheles stephensi
18.3 KB
ID Mapping
Stable ID mapping between genesets AsteS1.3 and AsteS1.4 (RNA gene update)
Anopheles_stephensi_MAPPINGS_AsteS1.2_AsteI2.2.txt
Anopheles stephensi
688.95 KB
ID Mapping
Bidirectional mapping of transcript stable identifiers between the SDA-500 and Indian strains, genesets AsteS1.2 and AsteI2.2. The mapping is based on a projection between the...
Anopheles-stephensi-Indian_REPEATS.lib
Anopheles stephensi
202.47 KB
RepeatMasker library
RepeatMasker library file of repeats for Anopheles stephensi, Indian strain.
Anopheles-stephensi-SDA-500_REPEATS.lib
Anopheles stephensi
153.24 KB
RepeatMasker library
RepeatMasker library file of repeats for Anopheles stephensi, SDA-500 strain.
Anopheles-stephensi-Indian_REPEATFEATURES_AsteI2.gff3.gz
Anopheles stephensi
1.53 MB
Repeat features
Indian strain AsteI2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-stephensi-SDA-500_REPEATFEATURES_AsteS1.gff3.gz
Anopheles stephensi
3.41 MB
Repeat features
SDA-500 strain AsteS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-stephensi_indian_EXPR-STATS_VB-2019-06.txt.gz
Anopheles stephensi
334.97 KB
Expression statistics
Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.