Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 15 of 15
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Operations
File Organism Size Type Description
Culex-quinquefasciatus-Johannesburg_CONTIGS_CpipJ2.fa.gz Culex quinquefasciatus 160.07 MB Contigs Johannesburg strain genomic contig sequences, CpipJ2 assembly.
Culex-quinquefasciatus-Johannesburg_SCAFFOLDS_CpipJ2.fa.gz Culex quinquefasciatus 160.39 MB Scaffolds Johannesburg strain genomic scaffolds, CpipJ2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Culex-quinquefasciatus-Johannesburg_TRACE_2006-09.fa.gz Culex quinquefasciatus 2.05 GB Reads Johannesburg strain submitted trace reads as of September 2006.
Culex-quinquefasciatus-Johannesburg_PEPTIDES_CpipJ2.4.fa.gz Culex quinquefasciatus 5.28 MB Peptides Johannesburg strain peptide sequences, CpipJ2.4 geneset.
Culex-quinquefasciatus-Johannesburg_TRANSCRIPTS_CpipJ2.4.fa.gz Culex quinquefasciatus 8.12 MB Transcripts Johannesburg strain transcript sequences, CpipJ2.4 geneset.
Culex-quinquefasciatus-Johannesburg_BASEFEATURES_CpipJ2.4.gff3.gz Culex quinquefasciatus 2.78 MB Basefeatures Johannesburg strain CpipJ2.4 geneset in GFF3 format.
Culex-quinquefasciatus-Johannesburg_BASEFEATURES_CpipJ2.4.gtf.gz Culex quinquefasciatus 2.12 MB Basefeatures Johannesburg strain CpipJ2.4 geneset in GTF (v2.2) format.
Culex-quinquefasciatus_EST-CLIPPED_2012-12.fa.gz Culex quinquefasciatus 26.93 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Culex-quinquefasciatus_EST-RAW_2012-12.fa.gz Culex quinquefasciatus 27.24 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Culex-quinquefasciatus-Johannesburg_CONTIG2SCAFFOLD_CpipJ2.agp.gz Culex quinquefasciatus 1.17 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Culex quinquefasciatus Johannesburg strain, CpipJ2 assembly.
Culex-quinquefasciatus-Johannesburg_MAPPINGS_CpipJ2.2-CpipJ2.3.txt Culex quinquefasciatus 58.3 KB ID Mapping Stable ID mapping between genesets CpipJ2.2 and CpipJ2.3 (RNA gene update)
Culex-quinquefasciatus-Johannesburg_MODIFICATIONS_CpipJ1.4-CpipJ2.1-ncRNA.txt Culex quinquefasciatus 325.01 KB ID Mapping Johannesburg strain gene prediction stable identifier mapping for ncRNAs from CpipJ1.4 to CpipJ2.1.
Culex-quinquefasciatus-Johannesburg_REPEATS.lib Culex quinquefasciatus 3.91 MB RepeatMasker library RepeatMasker library file of repeats for Culex quinquefasciatus, Johannesburg strain.
Culex-quinquefasciatus-Johannesburg_REPEATFEATURES_CpipJ2.gff3.gz Culex quinquefasciatus 45.41 MB Repeat features Johannesburg strain CpipJ2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Culex-quinquefasciatus_EXPR-STATS_VB-2018-12.txt.gz Culex quinquefasciatus 1.08 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.