Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 11 of 11
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Operations
File Organism Size Type Description
Anopheles-quadriannulatus-SANGWE_CONTIGS_AquaS1.fa.gz Anopheles quadriannulatus 64.25 MB Contigs SANGWE strain genomic contig sequences, AquaS1 assembly.
Anopheles-quadriannulatus-SANGWE_SCAFFOLDS_AquaS1.fa.gz Anopheles quadriannulatus 65.13 MB Scaffolds SANGWE strain genomic scaffold sequences, AquaS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-quadriannulatus-SANGWE_PEPTIDES_AquaS1.10.fa.gz Anopheles quadriannulatus 4.47 MB Peptides SANGWE strain peptide sequences, AquaS1.10 geneset.
Anopheles-quadriannulatus-SANGWE_TRANSCRIPTS_AquaS1.10.fa.gz Anopheles quadriannulatus 8.37 MB Transcripts SANGWE strain transcript sequences, AquaS1.10 geneset.
Anopheles-quadriannulatus-SANGWE_BASEFEATURES_AquaS1.10.gff3.gz Anopheles quadriannulatus 2.02 MB Basefeatures SANGWE strain AquaS1.10 geneset in GFF3 format.
Anopheles-quadriannulatus-SANGWE_BASEFEATURES_AquaS1.10.gtf.gz Anopheles quadriannulatus 1.66 MB Basefeatures SANGWE strain AquaS1.10 geneset in GTF (v2.2) format.
Anopheles-quadriannulatus-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles quadriannulatus 2.05 MB Assembled transcriptome 46058 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-quadriannulatus-SANGWE_CONTIG2SCAFFOLD_AquaS1.agp.gz Anopheles quadriannulatus 423.05 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles quadriannulatus SANGWE strain, AquaS1 assembly.
Anopheles-quadriannulatus-SANGWE_MAPPINGS_AquaS1.4-AquaS1.5.txt Anopheles quadriannulatus 9.65 KB ID Mapping Stable ID mapping between genesets AquaS1.4 and AquaS1.5 (RNA gene update)
Anopheles-quadriannulatus-SANGWE_REPEATS.lib Anopheles quadriannulatus 282.38 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles quadriannulatus, SANGWE strain.
Anopheles-quadriannulatus-SANGWE_REPEATFEATURES_AquaS1.gff3.gz Anopheles quadriannulatus 4.6 MB Repeat features SANGWE strain AquaS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.