Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 23 of 23
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Operations
File Organism Size Type Description
Anopheles-merus-MAF_CONTIGS_AmerM2.fa.gz Anopheles merus 64.91 MB Contigs MAF strain genomic contig sequences, AmerM2 assembly.
Anopheles-merus-MAF_SCAFFOLDS_AmerM2.fa.gz Anopheles merus 65.98 MB Scaffolds MAF strain genomic scaffold sequences, AmerM2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-merus-MAF_PEPTIDES_AmerM2.9.fa.gz Anopheles merus 4.37 MB Peptides MAF strain peptide sequences, AmerM2.9 geneset.
Anopheles-merus-MAF_TRANSCRIPTS_AmerM2.9.fa.gz Anopheles merus 8.61 MB Transcripts MAF strain transcript sequences, AmerM2.9 geneset.
Anopheles-merus-MAF_BASEFEATURES_AmerM2.9.gff3.gz Anopheles merus 2.08 MB Basefeatures MAF strain AmerM2.9 geneset in GFF3 format.
Anopheles-merus-MAF_BASEFEATURES_AmerM2.9.gtf.gz Anopheles merus 1.72 MB Basefeatures MAF strain AmerM2.9 geneset in GTF (v2.2) format.
Anopheles-merus-MAF_CONTIG2SCAFFOLD_AmerM2.agp.gz Anopheles merus 319.99 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles merus MAF1 strain, AmerM2.1 assembly.
Anopheles-merus-MAF_MAPPINGS_AmerM2.2-AmerM2.3.txt Anopheles merus 9.65 KB ID Mapping Stable ID mapping between genesets AmerM2.2 and AmerM2.3 (RNA gene update)
Anopheles-merus-MAF_REPEATS.lib Anopheles merus 86.2 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles merus, MAF strain.
Anopheles-merus-MAF_REPEATFEATURES_AmerM2.gff3.gz Anopheles merus 5.14 MB Repeat features MAF strain AmerM2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_merus_unresolved_transcripts_2015_06.txt Anopheles merus 1.56 KB Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
anopheles_merus_projected_cdna_2015_06.fa Anopheles merus 25.55 MB Transcript projection cDNA sequence (from the old assembly) of projected transcripts.
anopheles_merus_projected_cds_2015_06.fa Anopheles merus 19.88 MB Transcript projection Coding sequence (from the old assembly) of projected transcripts.
anopheles_merus_projected_2015_06.gff3 Anopheles merus 9.63 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_merus_projected_pep_2015_06.fa Anopheles merus 6.83 MB Transcript projection Peptide sequence (from the old assembly) of projected transcripts.
anopheles_merus_README_2015_06.txt Anopheles merus 7.37 KB Transcript projection In VectorBase release 1506, Anopheles merus genes were projected from assembly version 1 (GCA_000473845.1) to assembly version 2 (GCA_000473845.2). This README file describes the...
anopheles_merus_report_2015_06.txt Anopheles merus 2.29 MB Transcript projection Description of the fate of every transcript in the old assembly, along with statistics to judge the quality and quantity of evidence. Columns: * transcript: stable ID * status:...
anopheles_merus_summary_2015_06.txt Anopheles merus 474 bytes Transcript projection A summary of the number of transcripts that could and could not be projected.
anopheles_merus_unprojected_cdna_2015_06.fa Anopheles merus 1.24 MB Transcript projection cDNA sequence (from the old assembly) of unprojected transcripts.
anopheles_merus_unprojected_cds_2015_06.fa Anopheles merus 1.08 MB Transcript projection Coding sequence (from the old assembly) of unprojected transcripts.
anopheles_merus_unprojected_2015_06.gff3 Anopheles merus 542.38 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_merus_unprojected_pep_2015_06.fa Anopheles merus 388.04 KB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Anopheles-merus_EXPR-STATS_VB-2019-06.txt.gz Anopheles merus 2.2 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.