Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 11 of 11
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Operations
File Organism Size Type Description
Musca-domestica-aabys_CONTIGS_MdomA1.fa.gz Musca domestica 195.5 MB Contigs Aabys strain genomic contig sequences, MdomA1 assembly.
Musca-domestica-aabys_SCAFFOLDS_MdomA1.fa.gz Musca domestica 187.53 MB Scaffolds Aabys strain genomic scaffold sequences, MdomA1 assembly, softmasked using WindowMasker, Dust, and TRF.
Musca-domestica-aabys_PEPTIDES_MdomA1.3.fa.gz Musca domestica 5.39 MB Peptides aabys strain peptide sequences, MdomA1.3 geneset.
Musca-domestica-aabys_TRANSCRIPTS_MdomA1.3.fa.gz Musca domestica 11.5 MB Transcripts aabys strain transcript sequences, MdomA1.3 geneset.
Musca-domestica-aabys_BASEFEATURES_MdomA1.3.gff3.gz Musca domestica 4.45 MB Basefeatures aabys strain MdomA1.3 geneset in GFF3 format.
Musca-domestica-aabys_BASEFEATURES_MdomA1.3.gtf.gz Musca domestica 2.67 MB Basefeatures aabys strain MdomA1.3 geneset in GTF (v2.2) format.
Musca-domestica_TSA_GDAV01.fa.gz Musca domestica 13.64 MB Assembled transcriptome TSA:GDAV00000000.1 pooled male and female larvae, pupae and adults.
Musca-domestica-aabys_CONTIG2SCAFFOLD_MdomA1.agp.gz Musca domestica 2.23 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Musca domestica Aabys strain, MdomA1.1 assembly.
Musca-domestica-aabys_MAPPINGS_MdomA1.2-MdomA1.3.txt Musca domestica 17.69 KB ID Mapping Stable ID mapping between genesets MdomA1.2 and MdomA1.3 (RNA gene update)
Musca-domestica-aabys_REPEATFEATURES_MdomA1.gff3.gz Musca domestica 64.15 MB Repeat features aabys strain repeat features (WindowMasker, Dust, TRF) in GFF3 format.
Musca-domestica_EXPR-STATS_VB-2019-04.txt.gz Musca domestica 1.95 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.