Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 301 - 350 of 662
Operations
File Organism Size Type Description
Anopheles-sinensis-China_MAPPINGS_AsinC2.1-AsinC2.2.txt Anopheles sinensis 15.77 KB ID Mapping Stable ID mapping between genesets AsinC2.1 and AsinC2.2 (RNA gene update)
Anopheles-sinensis-SINENSIS_MAPPINGS_AsinS2.1-AsinS2.2.txt Anopheles sinensis 11.8 KB ID Mapping Stable ID mapping between genesets AsinS2.1 and AsinS2.2 (RNA gene update)
Anopheles-sinensis-SINENSIS_REPEATS.lib Anopheles sinensis 20.64 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles sinensis, SINENSIS strain.
Anopheles-sinensis-China_REPEATS.lib Anopheles sinensis 424.99 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles sinensis, China strain.
Anopheles-sinensis-China_REPEATFEATURES_AsinC2.gff3.gz Anopheles sinensis 3.16 MB Repeat features China strain AsinC2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-sinensis-SINENSIS_REPEATFEATURES_AsinS2.gff3.gz Anopheles sinensis 3.01 MB Repeat features SINENSIS strain AsinS2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_sinensis_unresolved_transcripts_2015_06.txt Anopheles sinensis 5.5 KB Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
anopheles_sinensis_projected_cdna_2015_06.fa Anopheles sinensis 21.49 MB Transcript projection cDNA sequence (from the old assembly) of projected transcripts.
anopheles_sinensis_projected_cds_2015_06.fa Anopheles sinensis 17.53 MB Transcript projection Coding sequence (from the old assembly) of projected transcripts.
anopheles_sinensis_projected_2015_06.gff3 Anopheles sinensis 8.61 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_sinensis_projected_pep_2015_06.fa Anopheles sinensis 6.05 MB Transcript projection Peptide sequence (from the old assembly) of projected transcripts.
anopheles_sinensis_README_2015_06.txt Anopheles sinensis 7.38 KB Transcript projection In VectorBase release 1506, Anopheles sinensis genes were projected from assembly version 1 (GCA_000472065.1) to assembly version 2 (GCA_000472065.2). This README file describes...
anopheles_sinensis_report_2015_06.txt Anopheles sinensis 2.75 MB Transcript projection Description of the fate of every transcript in the old assembly, along with statistics to judge the quality and quantity of evidence. Columns: * transcript: stable ID * status:...
anopheles_sinensis_summary_2015_06.txt Anopheles sinensis 478 bytes Transcript projection A summary of the number of transcripts that could and could not be projected.
anopheles_sinensis_unprojected_cdna_2015_06.fa Anopheles sinensis 3.59 MB Transcript projection cDNA sequence (from the old assembly) of unprojected transcripts.
anopheles_sinensis_unprojected_cds_2015_06.fa Anopheles sinensis 3.19 MB Transcript projection Coding sequence (from the old assembly) of unprojected transcripts.
anopheles_sinensis_unprojected_2015_06.gff3 Anopheles sinensis 1.69 MB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_sinensis_unprojected_pep_2015_06.fa Anopheles sinensis 1.12 MB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Anopheles-stephensi_indian_MSM-STATS_VB-2018-04.txt.gz Anopheles stephensi 297.41 KB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Anopheles-stephensi-Indian_CONTIGS_AsteI2.fa.gz Anopheles stephensi 63.2 MB Contigs Indian strain genomic contig sequences, AsteI2 assembly.
Anopheles-stephensi-SDA-500_CONTIGS_AsteS1.fa.gz Anopheles stephensi 60.01 MB Contigs SDA-500 strain genomic contig sequences, AsteS1 assembly.
Anopheles-stephensi-Indian_SCAFFOLDS_AsteI2.fa.gz Anopheles stephensi 63.23 MB Scaffolds Indian strain genomic scaffold sequences, AsteI2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-stephensi-SDA-500_SCAFFOLDS_AsteS1.fa.gz Anopheles stephensi 59.14 MB Scaffolds SDA-500 strain genomic scaffolds sequences, AsteS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-stephensi-SDA-500_PEPTIDES_AsteS1.6.fa.gz Anopheles stephensi 4.45 MB Peptides SDA-500 strain peptide sequences, AsteS1.6 geneset.
Anopheles-stephensi-Indian_PEPTIDES_AsteI2.3.fa.gz Anopheles stephensi 4.13 MB Peptides Indian strain peptide sequences, AsteI2.3 geneset.
Anopheles-stephensi-SDA-500_TRANSCRIPTS_AsteS1.6.fa.gz Anopheles stephensi 7.94 MB Transcripts SDA-500 strain transcript sequences, AsteS1.6 geneset.
Anopheles-stephensi-Indian_TRANSCRIPTS_AsteI2.3.fa.gz Anopheles stephensi 6.31 MB Transcripts Indian strain transcript sequences, AsteI2.3 geneset.
Anopheles-stephensi-SDA-500_BASEFEATURES_AsteS1.6.gff3.gz Anopheles stephensi 1.96 MB Basefeatures SDA-500 strain AsteS1.6 geneset in GFF3 format.
Anopheles-stephensi-SDA-500_BASEFEATURES_AsteS1.6.gtf.gz Anopheles stephensi 1.62 MB Basefeatures SDA-500 strain AsteS1.6 geneset in GTF (v2.2) format.
Anopheles-stephensi-Indian_BASEFEATURES_AsteI2.3.gff3.gz Anopheles stephensi 1.8 MB Basefeatures Indian strain AsteI2.3 geneset in GFF3 format.
Anopheles-stephensi-Indian_BASEFEATURES_AsteI2.3.gtf.gz Anopheles stephensi 1.37 MB Basefeatures Indian strain AsteI2.3 geneset in GTF (v2.2) format.
Anopheles-stephensi_EST-CLIPPED_2012-12.fa.gz Anopheles stephensi 1.88 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Anopheles-stephensi_EST-RAW_2012-12.fa.gz Anopheles stephensi 2.15 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Anopheles-stephensi-Indian_TSA_GBVY01.fa.gz Anopheles stephensi 935.25 KB Assembled transcriptome TSA:GBVY00000000.1 from adult female midgut
Anopheles-stephensi-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles stephensi 2.7 MB Assembled transcriptome 61734 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-stephensi-SDA-500_CONTIG2SCAFFOLD_AsteS1.agp.gz Anopheles stephensi 221.19 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles stephensi SDA-500 strain, AsteS1 assembly.
Anopheles-stephensi-Indian_CONTIG2SCAFFOLD_AsteI2.agp.gz Anopheles stephensi 344 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles stephensi Indian strain, AsteI2.2 assembly.
Anopheles-stephensi-SDA-500_CONTIG2SCAFFOLD_AsteS1.agp.gz Anopheles stephensi 217.57 KB Contig to Scaffold mapping AGP file relating contigs to scaffolds for the Anopheles stephensi SDA-500 strain, AsteS1 assembly.
Anopheles-stephensi-Indian_MAPPINGS_AsteI2.2-AsteI2.3.txt Anopheles stephensi 15.09 KB ID Mapping Stable ID mapping between genesets AsteI2.2 and AsteI2.3 (RNA gene update)
Anopheles-stephensi-SDA-500_MAPPINGS_AsteS1.3-AsteS1.4.txt Anopheles stephensi 18.3 KB ID Mapping Stable ID mapping between genesets AsteS1.3 and AsteS1.4 (RNA gene update)
Anopheles_stephensi_MAPPINGS_AsteS1.2_AsteI2.2.txt Anopheles stephensi 688.95 KB ID Mapping Bidirectional mapping of transcript stable identifiers between the SDA-500 and Indian strains, genesets AsteS1.2 and AsteI2.2. The mapping is based on a projection between the...
Anopheles-stephensi-Indian_REPEATS.lib Anopheles stephensi 202.47 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles stephensi, Indian strain.
Anopheles-stephensi-SDA-500_REPEATS.lib Anopheles stephensi 153.24 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles stephensi, SDA-500 strain.
Anopheles-stephensi-Indian_REPEATFEATURES_AsteI2.gff3.gz Anopheles stephensi 1.53 MB Repeat features Indian strain AsteI2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-stephensi-SDA-500_REPEATFEATURES_AsteS1.gff3.gz Anopheles stephensi 3.41 MB Repeat features SDA-500 strain AsteS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Biomphalaria-glabrata_MSM-STATS_VB-2018-04.txt.gz Biomphalaria glabrata 1.39 MB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Biomphalaria-glabrata-BB02_CONTIGS_BglaB1.fa.gz Biomphalaria glabrata 273.66 MB Contigs BB02 strain genomic contig sequences, BglaB1 assembly.
Biomphalaria-glabrata-BB02_SCAFFOLDS_BglaB1.fa.gz Biomphalaria glabrata 259.74 MB Scaffolds BB02 strain genomic scaffold sequences, BglaB1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Biomphalaria-glabrata-BB02_PEPTIDES_BglaB1.6.fa.gz Biomphalaria glabrata 7.32 MB Peptides BB02 strain peptide sequences, BglaB1.6 geneset.
Biomphalaria-glabrata-BB02_TRANSCRIPTS_BglaB1.6.fa.gz Biomphalaria glabrata 19.69 MB Transcripts BB02 strain transcript sequences, BglaB1.6 geneset.

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