Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 351 - 400 of 664
Operations
File Organism Size Type Description
Biomphalaria-glabrata-BB02_BASEFEATURES_BglaB1.6.gff3.gz Biomphalaria glabrata 13.34 MB Basefeatures BB02 strain BglaB1.6 geneset in GFF3 format.
Biomphalaria-glabrata-BB02_BASEFEATURES_BglaB1.6.gtf.gz Biomphalaria glabrata 7.18 MB Basefeatures BB02 strain BglaB1.6 geneset in GTF (v2.2) format.
Biomphalaria-glabrata-BB02_CONTIG2SCAFFOLD_BglaB1.agp.gz Biomphalaria glabrata 4.05 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Biomphalaria glabrata BB02 strain, BglaB1 assembly.
Biomphalaria-glabrata-BB02_MAPPINGS_BglaB1.4-BglaB1.5.txt Biomphalaria glabrata 109.62 KB ID Mapping Stable ID mapping between genesets BglaB1.4 and BglaB1.5 (RNA gene update)
Biomphalaria-glabrata-BB02_REPEATS.lib Biomphalaria glabrata 613.7 KB RepeatMasker library RepeatMasker library file of repeats for Biomphalaria glabrata, BB02 strain.
Biomphalaria-glabrata-BB02_REPEATFEATURES_BglaB1.gff3.gz Biomphalaria glabrata 60.41 MB Repeat features BB02 strain BglaB1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Cimex-lectularius_MSM-STATS_VB-2018-08.txt.gz Cimex lectularius 624.14 KB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Cimex-lectularius-Harlan_CONTIGS_ClecH1.fa.gz Cimex lectularius 149.89 MB Contigs Harlan strain genome contig sequences, ClecH1 assembly.
Cimex-lectularius-Harlan_SCAFFOLDS_ClecH1.fa.gz Cimex lectularius 151.73 MB Scaffolds Harlan strain genome scaffold sequences, ClecH1 assembly.
Cimex-lectularius-Harlan_PEPTIDES_ClecH1.3.fa.gz Cimex lectularius 3.58 MB Peptides Harlan strain peptide sequences, ClecH1.3 geneset.
Cimex-lectularius-Harlan_TRANSCRIPTS_ClecH1.3.fa.gz Cimex lectularius 8.89 MB Transcripts Harlan strain transcript sequences, ClecH1.3 geneset.
Cimex-lectularius-Harlan_BASEFEATURES_ClecH1.3.gff3.gz Cimex lectularius 2.35 MB Basefeatures Harlan strain ClecH1.3 geneset in GFF3 format.
Cimex-lectularius-Harlan_BASEFEATURES_ClecH1.3.gtf.gz Cimex lectularius 2.2 MB Basefeatures Harlan strain ClecH1.3 geneset in GTF (v2.2) format.
Cimex-lectularius-Harlan_CONTIG2SCAFFOLD_ClecH1.agp.gz Cimex lectularius 1.16 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Cimex lectularius Harlan strain, ClecH1 assembly.
Cimex-lectularius-Harlan_MAPPINGS_ClecH1.2-ClecH1.3.txt Cimex lectularius 62.26 KB ID Mapping Stable ID mapping between genesets ClecH1.2 and ClecH1.3 (RNA gene update)
Cimex-lectularius-Harlan_REPEATS.lib Cimex lectularius 2.57 MB RepeatMasker library RepeatMasker library file of repeats for Cimex lectularius, Harlan strain.
Cimex-lectularius-Harlan_REPEATFEATURES_ClecH1.gff3.gz Cimex lectularius 13.85 MB Repeat features Harlan strain ClecH1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Culex-quinquefasciatus_MSM-STATS_VB-2018-08.txt.gz Culex quinquefasciatus 973.44 KB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Culex-quinquefasciatus-Johannesburg_CONTIGS_CpipJ2.fa.gz Culex quinquefasciatus 160.07 MB Contigs Johannesburg strain genomic contig sequences, CpipJ2 assembly.
Culex-quinquefasciatus-Johannesburg_SCAFFOLDS_CpipJ2.fa.gz Culex quinquefasciatus 160.39 MB Scaffolds Johannesburg strain genomic scaffolds, CpipJ2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Culex-quinquefasciatus-Johannesburg_TRACE_2006-09.fa.gz Culex quinquefasciatus 2.05 GB Reads Johannesburg strain submitted trace reads as of September 2006.
Culex-quinquefasciatus-Johannesburg_PEPTIDES_CpipJ2.4.fa.gz Culex quinquefasciatus 5.28 MB Peptides Johannesburg strain peptide sequences, CpipJ2.4 geneset.
Culex-quinquefasciatus-Johannesburg_TRANSCRIPTS_CpipJ2.4.fa.gz Culex quinquefasciatus 8.12 MB Transcripts Johannesburg strain transcript sequences, CpipJ2.4 geneset.
Culex-quinquefasciatus-Johannesburg_BASEFEATURES_CpipJ2.4.gff3.gz Culex quinquefasciatus 2.78 MB Basefeatures Johannesburg strain CpipJ2.4 geneset in GFF3 format.
Culex-quinquefasciatus-Johannesburg_BASEFEATURES_CpipJ2.4.gtf.gz Culex quinquefasciatus 2.12 MB Basefeatures Johannesburg strain CpipJ2.4 geneset in GTF (v2.2) format.
Culex-quinquefasciatus_EST-CLIPPED_2012-12.fa.gz Culex quinquefasciatus 26.93 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Culex-quinquefasciatus_EST-RAW_2012-12.fa.gz Culex quinquefasciatus 27.24 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Culex-quinquefasciatus-Johannesburg_CONTIG2SCAFFOLD_CpipJ2.agp.gz Culex quinquefasciatus 1.17 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Culex quinquefasciatus Johannesburg strain, CpipJ2 assembly.
Culex-quinquefasciatus-Johannesburg_MAPPINGS_CpipJ2.2-CpipJ2.3.txt Culex quinquefasciatus 58.3 KB ID Mapping Stable ID mapping between genesets CpipJ2.2 and CpipJ2.3 (RNA gene update)
Culex-quinquefasciatus-Johannesburg_MODIFICATIONS_CpipJ1.4-CpipJ2.1-ncRNA.txt Culex quinquefasciatus 325.01 KB ID Mapping Johannesburg strain gene prediction stable identifier mapping for ncRNAs from CpipJ1.4 to CpipJ2.1.
Culex-quinquefasciatus-Johannesburg_REPEATS.lib Culex quinquefasciatus 3.91 MB RepeatMasker library RepeatMasker library file of repeats for Culex quinquefasciatus, Johannesburg strain.
Culex-quinquefasciatus-Johannesburg_REPEATFEATURES_CpipJ2.gff3.gz Culex quinquefasciatus 45.41 MB Repeat features Johannesburg strain CpipJ2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Glossina-austeni-TTRI_CONTIGS_GausT1.fa.gz Glossina austeni 103.5 MB Contigs TTRI strain genomic contig sequences, GausT1 assembly.
Glossina-austeni-TTRI_SCAFFOLDS_GausT1.fa.gz Glossina austeni 103.77 MB Scaffolds TTRI strain genomic scaffold sequences, GausT1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Glossina-austeni-TTRI_PEPTIDES_GausT1.6.fa.gz Glossina austeni 5.2 MB Peptides TTRI strain peptide sequences, GausT1.6 geneset.
Glossina-austeni-TTRI_TRANSCRIPTS_GausT1.6.fa.gz Glossina austeni 10 MB Transcripts TTRI strain transcript sequences, GausT1.6 geneset.
Glossina-austeni-TTRI_BASEFEATURES_GausT1.6.gff3.gz Glossina austeni 2.84 MB Basefeatures TTRI strain GausT1.6 geneset in GFF3 format.
Glossina-austeni-TTRI_BASEFEATURES_GausT1.6.gtf.gz Glossina austeni 2.54 MB Basefeatures TTRI strain GausT1.6 geneset in GTF (v2.2) format.
Glossina-austeni-TTRI_CONTIG2SCAFFOLD_GausT1.agp.gz Glossina austeni 457.85 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina austeni TTRI strain, GausT1.2 assembly.
Glossina-austeni-TTRI_MAPPINGS_GausT1.3-GausT1.4.txt Glossina austeni 22.06 KB ID Mapping Stable ID mapping between genesets GausT1.3 and GausT1.4 (RNA gene update)
Glossina-austeni-TTRI_REPEATS.lib Glossina austeni 1.38 MB RepeatMasker library RepeatMasker library file of repeats for Glossina austeni, TTRI strain.
Glossina-austeni-TTRI_REPEATFEATURES_GausT1.gff3.gz Glossina austeni 18.59 MB Repeat features TTRI strain GausT1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Glossina-brevipalpis-IAEA_CONTIGS_GbreI1.fa.gz Glossina brevipalpis 85.16 MB Contigs IAEA strain genomic contig sequences, GbreI1 assembly.
Glossina-brevipalpis-IAEA_SCAFFOLDS_GbreI1.fa.gz Glossina brevipalpis 85.55 MB Scaffolds IAEA strain genomic scaffold sequences, GbreI1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Glossina-brevipalpis-IAEA_PEPTIDES_GbreI1.6.fa.gz Glossina brevipalpis 4.35 MB Peptides IAEA strain peptide sequences, GbreI1.6 geneset.
Glossina-brevipalpis-IAEA_TRANSCRIPTS_GbreI1.6.fa.gz Glossina brevipalpis 10.54 MB Transcripts IAEA strain transcript sequences, GbreI1.6 geneset.
Glossina-brevipalpis-IAEA_BASEFEATURES_GbreI1.6.gff3.gz Glossina brevipalpis 2.29 MB Basefeatures IAEA strain GbreI1.6 geneset in GFF3 format.
Glossina-brevipalpis-IAEA_BASEFEATURES_GbreI1.6.gtf.gz Glossina brevipalpis 2.03 MB Basefeatures IAEA strain GbreI1.6 geneset in GTF (v2.2) format.
Glossina-brevipalpis-IAEA_CONTIG2SCAFFOLD_GbreI1.agp.gz Glossina brevipalpis 417.61 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina brevipalpis IAEA strain, GbreI1.2 assembly.
Glossina-brevipalpis-IAEA_MAPPINGS_GbreI1.3-GbreI1.4.txt Glossina brevipalpis 13.71 KB ID Mapping Stable ID mapping between genesets GbreI1.3 and GbreI1.4 (RNA gene update)

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