Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 551 - 600 of 664
Operations
File Organism Size Type Description
Rhodnius-prolixus-CDC_UNPROJECTED_PEP_RproC3.1.fa.gz Rhodnius prolixus 52.85 KB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Rhodnius-prolixus-CDC_UNRESOLVED_TRANSCRIPTS_RproC3.1.txt Rhodnius prolixus 434 bytes Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
Sarcoptes-scabiei-Arlian_CONTIGS_SscaA1.fa.gz Sarcoptes scabiei 16.71 MB Contigs Arlian strain genomic contigs sequences, SscaA1 assembly.
Sarcoptes-scabiei-Arlian_SCAFFOLDS_SscaA1.fa.gz Sarcoptes scabiei 16.71 MB Scaffolds Arlian strain genomic scaffolds sequences, SscaA1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Sarcoptes-scabiei-Arlian_PEPTIDES_SscaA1.2.fa.gz Sarcoptes scabiei 2.66 MB Peptides Arlian strain peptide sequences, SscaA1.2 geneset.
Sarcoptes-scabiei-Arlian_TRANSCRIPTS_SscaA1.2.fa.gz Sarcoptes scabiei 4.03 MB Transcripts Arlian strain transcript sequences, SscaA1.2 geneset.
Sarcoptes-scabiei-Arlian_BASEFEATURES_SscaA1.2.gff3.gz Sarcoptes scabiei 1.68 MB Basefeatures Arlian strain SscaA1.2 geneset in GFF3 format.
Sarcoptes-scabiei-Arlian_BASEFEATURES_SscaA1.2.gtf.gz Sarcoptes scabiei 1.02 MB Basefeatures Arlian strain SscaA1.2 geneset in GTF (v2.2) format.
Sarcoptes-scabiei-Arlian_CONTIG2SCAFFOLD_SscaA1.agp.gz Sarcoptes scabiei 155.79 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Sarcoptes scabiei Arlian strain, SscaA1 assembly.
Sarcoptes-scabiei-var-canis-Arlian_MAPPINGS_SscaA1.1-SscaA1.2.txt Sarcoptes scabiei 6.19 KB ID Mapping Stable ID mapping between genesets SscaA1.1 and SscaA1.2 (RNA gene update)
Sarcoptes-scabiei-Arlian_REPEATS.lib Sarcoptes scabiei 7.45 KB RepeatMasker library RepeatMasker library file of repeats for Sarcoptes scabiei, Arlian strain.
Sarcoptes-scabiei-Arlian_REPEATFEATURES_SscaA1.gff3.gz Sarcoptes scabiei 3.27 MB Repeat features Arlian strain SscaA1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Stomoxys-calcitrans-USDA_CONTIGS_ScalU1.fa.gz Stomoxys calcitrans 237.83 MB Contigs USDA strain genome contig sequences, ScalU1 assembly.
Stomoxys-calcitrans-USDA_SCAFFOLDS_ScalU1.fa.gz Stomoxys calcitrans 254.86 MB Scaffolds USDA strain genomic scaffolds sequences, ScalU1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Stomoxys-calcitrans-USDA_PEPTIDES_ScalU1.4.fa.gz Stomoxys calcitrans 5.62 MB Peptides USDA strain peptide sequences, ScalU1.4 geneset.
Stomoxys-calcitrans-USDA_TRANSCRIPTS_ScalU1.4.fa.gz Stomoxys calcitrans 14.05 MB Transcripts USDA strain transcript sequences, ScalU1.4 geneset.
Stomoxys-calcitrans-USDA_BASEFEATURES_ScalU1.4.gff3.gz Stomoxys calcitrans 4.53 MB Basefeatures USDA strain ScalU1.4 geneset in GFF3 format.
Stomoxys-calcitrans-USDA_BASEFEATURES_ScalU1.4.gtf.gz Stomoxys calcitrans 3.16 MB Basefeatures USDA strain ScalU1.4 geneset in GTF (v2.2) format.
Stomoxys-calcitrans-8C7A2A5H3J4_TSA_GDIM01.fa.gz Stomoxys calcitrans 10.32 MB Assembled transcriptome TSA:GDIM00000000.1 pooled male and female whole animals
Stomoxys-calcitrans-USDA_CONTIG2SCAFFOLD_ScalU1.agp.gz Stomoxys calcitrans 3.03 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Stomoxys calcitrans USDA strain, ScalU1.1 assembly.
Stomoxys-calcitrans-USDA_MAPPINGS_ScalU1.1-ScalU1.2.txt Stomoxys calcitrans 12.57 KB ID Mapping Stable ID mapping between genesets ScalU1.1 and ScalU1.2 (RNA gene update)
Stomoxys-calcitrans-USDA_REPEATS.lib Stomoxys calcitrans 417.15 KB RepeatMasker library RepeatMasker library file of repeats for Stomoxys calcitrans, USDA strain.
Stomoxys-calcitrans-USDA_REPEATFEATURES_ScalU1.gff3.gz Stomoxys calcitrans 49.32 MB Repeat features USDA strain ScalU1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Triatoma-dimidiata-mixed-stages-Lavore-Martinez-Barnetche.fa.gz Triatoma dimidiata 5.31 MB Assembled transcriptome These transcriptomes were normalized for a better transcript representation and it were made from insects at different developmental stages, eggs, larvae 1 to 5 and, males and...
Triatoma-dimidiata_salivary_glands_TSA_GECL01.fa.gz Triatoma dimidiata 1.48 MB Assembled transcriptome Transcriptome shotgun assembly from https://www.ncbi.nlm.nih.gov/nuccore/GECL00000000.1
Triatoma-infestans-mixed-stages-Lavore-Martinez-Barnetche.fa.gz Triatoma infestans 6.62 MB Assembled transcriptome These transcriptomes were normalized for a better transcript representation and it were made from insects at different developmental stages, eggs, larvae 1 to 5 and, males and...
Triatoma-infestans_integument_TSA_GEMB01.fa.gz Triatoma infestans 1.58 MB Assembled transcriptome Transcript shotgun assembly from https://www.ncbi.nlm.nih.gov/nuccore/GEMB00000000.1
Triatoma-infestans-Chile_TSA_GBBI01.fa.gz Triatoma infestans 2.42 MB Assembled transcriptome TSA:GBBI00000000.1 from salivary glands
Triatoma-pallidipennis-mixed-stages-Lavore-Martinez-Barnetche.fa.gz Triatoma pallidipennis 5.75 MB Assembled transcriptome These transcriptomes were normalized for a better transcript representation and it were made from insects at different developmental stages, eggs, larvae 1 to 5 and, males and...
Triatoma-pallidipennis-salivary-glands_TSA_GEVD01.fa.gz Triatoma pallidipennis 13.03 MB Assembled transcriptome Transcript shotgun assembly from https://www.ncbi.nlm.nih.gov/nuccore/GEVD00000000.1
ONTOLOGY_VBCVVB-2018-06_2018-06.obo.gz 121.13 KB Ontology VectorBase Controlled Vocabulary (VBCV).
IR_MIROVB-2018-06_2018-06.obo.gz 27.57 KB Ontology Mosquito Insecticide Resistance Ontology.
ANATOMY_TGMA1.12_2013-06.obo.gz 133.59 KB Anatomy Mosquito anatomy ontology.
ANATOMY_TADS1.22_2013-04.obo.gz 45.28 KB Anatomy Tick Gross Anatomy.
MALARIA_IDOMAL1.3.9_2015-03.obo.gz 157.42 KB Malaria Disease ontology for Malaria.
DENGUE_IDODEN1.0_2014-08.obo.gz 129.86 KB Dengue Disease ontology for Dengue fever.
GENE-TREES-NEWICK_2018-06.tar.gz 6.17 MB Gene trees Gene trees in Newick (a.k.a. New Hampshire) format.
GENE-TREES-PEPTIDES_2018-06.tar.gz 164.34 MB Gene trees Gene trees in PhyloXML format, containing peptide alignments.
GENE-TREES-TRANSCRIPTS_2018-06.tar.gz 323.12 MB Gene trees Gene trees in PhyloXML format, containing transcript alignments.
GENE-ALIGN-PEPTIDES_2018-06.tar.gz 167.45 MB Gene alignments Alignments of peptide sequences, used to infer gene trees.
GENE-ALIGN-TRANSCRIPTS_2018-06.tar.gz 338.98 MB Gene alignments Alignments of transcript sequences, used to infer gene trees.
HOMOLOGS_2018-06.tar.gz 289.27 MB Homologs Homologs in OrthoXML format.
WG-ALIGN_2018-06_Anopheles-gambiae-AgamP4_Anopheles-atroparvus-AatrE3_lastz.tar.gz 46.09 MB Whole genome alignments Pairwise whole genome alignment between Anopheles gambiae (AgamP4) and Anopheles atroparvus (AatrE3), in MAF format.
WG-ALIGN_2018-04_Aedes-aegypti-lvpagwg-AaegL5_Aedes-albopictus-AaloF1_lastz.tar.gz 120.61 MB Whole genome alignments Pairwise whole genome alignment between () and (), in MAF format.
WG-ALIGN_2018-02_Aedes-aegypti-lvpagwg-AaegL5_Anopheles-gambiae-AgamP4_lastz.tar.gz 15.44 MB Whole genome alignments Pairwise whole genome alignment between () and (), in MAF format.
WG-ALIGN_2018-02_Aedes-aegypti-lvpagwg-AaegL5_Culex-quinquefasciatus-CpipJ2_lastz.tar.gz 29.97 MB Whole genome alignments Pairwise whole genome alignment between () and (), in MAF format.
WG-ALIGN_2018-02_Anopheles-gambiae-AgamP4_Anopheles-atroparvus-AatrE2_lastz.tar.gz 44.8 MB Whole genome alignments Pairwise whole genome alignment between Anopheles gambiae (AgamP4) and Anopheles atroparvus (AatrE2), in MAF format.
WG-ALIGN_2017-04_Anopheles-albimanus-AalbS2_Anopheles-arabiensis-AaraD1_lastz.tar.gz 23.65 MB Whole genome alignments Pairwise whole genome alignment between Anopheles albimanus (AalbS2) and Anopheles arabiensis (AaraD1), in MAF format.
WG-ALIGN_2017-04_Anopheles-albimanus-AalbS2_Anopheles-christyi-AchrA1_lastz.tar.gz 22.02 MB Whole genome alignments Pairwise whole genome alignment between Anopheles albimanus (AalbS2) and Anopheles christyi (AchrA1), in MAF format.
WG-ALIGN_2017-04_Anopheles-albimanus-AalbS2_Anopheles-coluzzii-AcolM1_lastz.tar.gz 22.73 MB Whole genome alignments Pairwise whole genome alignment between Anopheles albimanus (AalbS2) and Anopheles coluzzii (AcolM1), in MAF format.

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