Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 201 - 250 of 664
Operations
File Organism Size Type Description
Anopheles-gambiae-PEST_REPEATS.lib Anopheles gambiae 8.69 MB RepeatMasker library RepeatMasker library file of repeats for Anopheles gambiae, PEST strain.
Anopheles-gambiae-PEST_REPEATFEATURES_AgamP4.gff3.gz Anopheles gambiae 6.1 MB Repeat features PEST strain AgamP4 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae-Pimperena_REPEATFEATURES_AgamS1.gff3.gz Anopheles gambiae 6.76 MB Repeat features Pimperena strain AgamS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-koliensis-AKwgs3_CONTIGS_JXXB01.fa.gz Anopheles koliensis 45.03 MB Contigs AKwgs3 isolate genome contig sequences, JXXB01 assembly.
Anopheles-maculatus-maculatus3_CONTIGS_AmacM1.fa.gz Anopheles maculatus 40.12 MB Contigs maculatus3 strain genomic contigs sequences, AmacM1 assembly.
Anopheles-maculatus-maculatus3_SCAFFOLDS_AmacM1.fa.gz Anopheles maculatus 40.43 MB Scaffolds maculatus3 strain genomic scaffolds sequences, AmacM1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-maculatus-maculatus3_PEPTIDES_AmacM1.5.fa.gz Anopheles maculatus 3.58 MB Peptides maculatus3 strain peptide sequences, AmacM1.5 geneset.
Anopheles-maculatus-maculatus3_TRANSCRIPTS_AmacM1.5.fa.gz Anopheles maculatus 5.38 MB Transcripts maculatus3 strain transcript sequences, AmacM1.5 geneset.
Anopheles-maculatus-maculatus3_BASEFEATURES_AmacM1.5.gff3.gz Anopheles maculatus 2.75 MB Basefeatures maculatus3 strain AmacM1.5 geneset in GFF3 format.
Anopheles-maculatus-maculatus3_BASEFEATURES_AmacM1.5.gtf.gz Anopheles maculatus 1.36 MB Basefeatures maculatus3 strain AmacM1.5 geneset in GTF (v2.2) format.
Anopheles-maculatus-maculatus3_CONTIG2SCAFFOLD_AmacM1.agp.gz Anopheles maculatus 559.25 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles maculatus maculatus3 strain, AmacM1 assembly.
Anopheles-maculatus-b-maculatus3_MAPPINGS_AmacM1.3-AmacM1.4.txt Anopheles maculatus 5.56 KB ID Mapping Stable ID mapping between genesets AmacM1.3 and AmacM1.4 (RNA gene update)
Anopheles-maculatus-maculatus3_REPEATS.lib Anopheles maculatus 2.53 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles maculatus, maculatus3 strain.
Anopheles-maculatus-maculatus3_REPEATFEATURES_AmacM1.gff3.gz Anopheles maculatus 2.92 MB Repeat features maculatus3 strain AmacM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-melas-CM1001059_A_CONTIGS_AmelC2.fa.gz Anopheles melas 61.63 MB Contigs CM1001059_A strain genomic contigs sequences, AmelC2 assembly.
Anopheles-melas-CM1001059_A_SCAFFOLDS_AmelC2.fa.gz Anopheles melas 62.28 MB Scaffolds CM1001059_A strain genomic scaffolds sequences, AmelC2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-melas-CM1001059_A_PEPTIDES_AmelC2.5.fa.gz Anopheles melas 4.54 MB Peptides CM1001059_A strain peptide sequences, AmelC2.5 geneset.
Anopheles-melas-CM1001059_A_TRANSCRIPTS_AmelC2.5.fa.gz Anopheles melas 6.81 MB Transcripts CM1001059_A strain transcript sequences, AmelC2.5 geneset.
Anopheles-melas-CM1001059_A_BASEFEATURES_AmelC2.5.gff3.gz Anopheles melas 2.44 MB Basefeatures CM1001059_A strain AmelC2.5 geneset in GFF3 format.
Anopheles-melas-CM1001059_A_BASEFEATURES_AmelC2.5.gtf.gz Anopheles melas 1.67 MB Basefeatures CM1001059_A strain AmelC2.5 geneset in GTF (v2.2) format.
Anopheles-melas-CM1001059_A_CONTIG2SCAFFOLD_AmelC2.agp.gz Anopheles melas 439.33 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles melas CM1001059_A strain, AmelC2.1 assembly.
Anopheles-melas-CM1001059_A_MAPPINGS_AmelC2.2-AmelC2.3.txt Anopheles melas 8.6 KB ID Mapping Stable ID mapping between genesets AmelC2.2 and AmelC2.3 (RNA gene update)
Anopheles-melas-CM1001059_A_REPEATS.lib Anopheles melas 10.22 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles melas, CM1001059_A strain.
Anopheles-melas-CM1001059_A_REPEATFEATURES_AmelC2.gff3.gz Anopheles melas 5.02 MB Repeat features CM1001059_A strain AmelC2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_melas_unresolved_transcripts_2015_06.txt Anopheles melas 238 bytes Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
anopheles_melas_projected_cdna_2015_06.fa Anopheles melas 20.99 MB Transcript projection cDNA sequence (from the old assembly) of projected transcripts.
anopheles_melas_projected_cds_2015_06.fa Anopheles melas 20.9 MB Transcript projection Coding sequence (from the old assembly) of projected transcripts.
anopheles_melas_projected_2015_06.gff3 Anopheles melas 9.95 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_melas_projected_pep_2015_06.fa Anopheles melas 7.21 MB Transcript projection Peptide sequence (from the old assembly) of projected transcripts.
anopheles_melas_README_2015_06.txt Anopheles melas 7.38 KB Transcript projection In VectorBase release 1506, Anopheles melas genes were projected from assembly version 1 (GCA_000473525.1) to assembly version 2 (GCA_000473525.2). This README file describes the...
anopheles_melas_report_2015_06.txt Anopheles melas 2.87 MB Transcript projection Description of the fate of every transcript in the old assembly, along with statistics to judge the quality and quantity of evidence. Columns: * transcript: stable ID * status:...
anopheles_melas_summary_2015_06.txt Anopheles melas 472 bytes Transcript projection A summary of the number of transcripts that could and could not be projected.
anopheles_melas_unprojected_cdna_2015_06.fa Anopheles melas 1.75 MB Transcript projection cDNA sequence (from the old assembly) of unprojected transcripts.
anopheles_melas_unprojected_cds_2015_06.fa Anopheles melas 1.75 MB Transcript projection Coding sequence (from the old assembly) of unprojected transcripts.
anopheles_melas_unprojected_2015_06.gff3 Anopheles melas 144.51 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_melas_unprojected_pep_2015_06.fa Anopheles melas 613.12 KB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Anopheles-merus_MSM-STATS_VB-2018-08.txt.gz Anopheles merus 2.15 MB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Anopheles-merus-MAF_CONTIGS_AmerM2.fa.gz Anopheles merus 64.91 MB Contigs MAF strain genomic contig sequences, AmerM2 assembly.
Anopheles-merus-MAF_SCAFFOLDS_AmerM2.fa.gz Anopheles merus 65.98 MB Scaffolds MAF strain genomic scaffold sequences, AmerM2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-merus-MAF_PEPTIDES_AmerM2.7.fa.gz Anopheles merus 4.35 MB Peptides MAF strain peptide sequences, AmerM2.7 geneset.
Anopheles-merus-MAF_TRANSCRIPTS_AmerM2.7.fa.gz Anopheles merus 8.45 MB Transcripts MAF strain transcript sequences, AmerM2.7 geneset.
Anopheles-merus-MAF_BASEFEATURES_AmerM2.7.gff3.gz Anopheles merus 2.06 MB Basefeatures MAF strain AmerM2.7 geneset in GFF3 format.
Anopheles-merus-MAF_BASEFEATURES_AmerM2.7.gtf.gz Anopheles merus 1.71 MB Basefeatures MAF strain AmerM2.7 geneset in GTF (v2.2) format.
Anopheles-merus-MAF_CONTIG2SCAFFOLD_AmerM2.agp.gz Anopheles merus 319.99 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles merus MAF1 strain, AmerM2.1 assembly.
Anopheles-merus-MAF_MAPPINGS_AmerM2.2-AmerM2.3.txt Anopheles merus 9.65 KB ID Mapping Stable ID mapping between genesets AmerM2.2 and AmerM2.3 (RNA gene update)
Anopheles-merus-MAF_REPEATS.lib Anopheles merus 86.2 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles merus, MAF strain.
Anopheles-merus-MAF_REPEATFEATURES_AmerM2.gff3.gz Anopheles merus 5.14 MB Repeat features MAF strain AmerM2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_merus_unresolved_transcripts_2015_06.txt Anopheles merus 1.56 KB Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
anopheles_merus_projected_cdna_2015_06.fa Anopheles merus 25.55 MB Transcript projection cDNA sequence (from the old assembly) of projected transcripts.
anopheles_merus_projected_cds_2015_06.fa Anopheles merus 19.88 MB Transcript projection Coding sequence (from the old assembly) of projected transcripts.

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