Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 401 - 450 of 662
Operations
File Organism Size Type Description
Glossina-brevipalpis-IAEA_REPEATS.lib Glossina brevipalpis 863.24 KB RepeatMasker library RepeatMasker library file of repeats for Glossina brevipalpis, IAEA strain.
Glossina-brevipalpis-IAEA_REPEATFEATURES_GbreI1.gff3.gz Glossina brevipalpis 16.38 MB Repeat features IAEA strain GbreI1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Glossina-fuscipes-IAEA_CONTIGS_GfusI1.fa.gz Glossina fuscipes 105.98 MB Contigs IAEA strain genomic contig sequences, GfusI1 assembly.
Glossina-fuscipes-IAEA_SCAFFOLDS_GfusI1.fa.gz Glossina fuscipes 106.13 MB Scaffolds IAEA strain genomic scaffold sequences, GfusI1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Glossina-fuscipes-IAEA_PEPTIDES_GfusI1.6.fa.gz Glossina fuscipes 5.15 MB Peptides IAEA strain peptide sequences, GfusI1.6 geneset.
Glossina-fuscipes-IAEA_TRANSCRIPTS_GfusI1.6.fa.gz Glossina fuscipes 11.83 MB Transcripts IAEA strain transcript sequences, GfusI1.6 geneset.
Glossina-fuscipes-IAEA_BASEFEATURES_GfusI1.6.gff3.gz Glossina fuscipes 2.94 MB Basefeatures IAEA strain GfusI1.6 geneset in GFF3 format.
Glossina-fuscipes-IAEA_BASEFEATURES_GfusI1.6.gtf.gz Glossina fuscipes 2.63 MB Basefeatures IAEA strain GfusI1.6 geneset in GTF (v2.2) format.
Glossina-fuscipes-IAEA_CONTIG2SCAFFOLD_GfusI1.agp.gz Glossina fuscipes 318.96 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina fuscipes IAEA strain, GfusI1.2 assembly.
Glossina-fuscipes-IAEA_MAPPINGS_GfusI1.3-GfusI1.4.txt Glossina fuscipes 23.02 KB ID Mapping Stable ID mapping between genesets GfusI1.3 and GfusI1.4 (RNA gene update)
Glossina-fuscipes-IAEA_REPEATS.lib Glossina fuscipes 1.42 MB RepeatMasker library RepeatMasker library file of repeats for Glossina fuscipes, IAEA strain.
Glossina-fuscipes-IAEA_REPEATFEATURES_GfusI1.gff3.gz Glossina fuscipes 18.33 MB Repeat features IAEA strain GfusI1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Glossina-morsitans_MSM-STATS_VB-2018-04.txt.gz Glossina morsitans 1.4 MB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Glossina-morsitans-Yale_CONTIGS_GmorY1.fa.gz Glossina morsitans 114.29 MB Contigs Yale strain genomic contig sequenes, GmorY1 assembly.
Glossina-morsitans-Yale_SCAFFOLDS_GmorY1.fa.gz Glossina morsitans 106.02 MB Scaffolds Yale strain genomic scaffold sequences, GmorY1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Glossina-morsitans_TRACE_2008-11.fa.gz Glossina morsitans 271.35 MB Reads Submitted trace reads as of November 2007.
Glossina-morsitans-Yale_PEPTIDES_GmorY1.8.fa.gz Glossina morsitans 4.31 MB Peptides Yale strain peptide sequences, GmorY1.8 geneset.
Glossina-morsitans-Yale_TRANSCRIPTS_GmorY1.8.fa.gz Glossina morsitans 9.59 MB Transcripts Yale strain transcript sequences, GmorY1.8 geneset.
Glossina-morsitans-Yale_BASEFEATURES_GmorY1.8.gff3.gz Glossina morsitans 2.36 MB Basefeatures Yale strain GmorY1.8 geneset in GFF3 format.
Glossina-morsitans-Yale_BASEFEATURES_GmorY1.8.gtf.gz Glossina morsitans 1.89 MB Basefeatures Yale strain GmorY1.8 geneset in GTF (v2.2) format.
Glossina-morsitans_EST-CLIPPED_2012-12.fa.gz Glossina morsitans 16.83 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Glossina-morsitans_EST-RAW_2012-12.fa.gz Glossina morsitans 16.88 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Glossina-morsitans-Yale_CONTIG2SCAFFOLD_GmorY1.agp.gz Glossina morsitans 400.97 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina morsitans Yale strain, GmorY1 assembly.
Glossina-morsitans-Yale_MAPPINGS_GmorY1.5-GmorY1.6.txt Glossina morsitans 27.36 KB ID Mapping Stable ID mapping between genesets GmorY1.5 and GmorY1.6 (RNA gene update)
Glossina-morsitans-Yale_MODIFICATIONS_GmorY1.0-GmorY1.1.txt Glossina morsitans 411.05 KB ID Mapping Yale strain gene prediction stable identifier mapping from the preliminary GmorY1.0 to release GmorY1.1 geneset
Glossina-morsitans-Yale_REPEATS.lib Glossina morsitans 1.4 MB RepeatMasker library RepeatMasker library file of repeats for Glossina morsitans, Yale strain.
Glossina-morsitans-Yale_REPEATFEATURES_GmorY1.gff3.gz Glossina morsitans 18.32 MB Repeat features Yale strain GmorY1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Glossina-pallidipes-IAEA_CONTIGS_GpalI1.fa.gz Glossina pallidipes 103.32 MB Contigs IAEA strain genomic contig sequences, GpalI1 assembly.
Glossina-pallidipes-IAEA_SCAFFOLDS_GpalI1.fa.gz Glossina pallidipes 103.3 MB Scaffolds IAEA strain genomic scaffold sequences, GpalI1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Glossina-pallidipes-IAEA_PEPTIDES_GpalI1.6.fa.gz Glossina pallidipes 4.98 MB Peptides IAEA strain peptide sequences, GpalI1.6 geneset.
Glossina-pallidipes-IAEA_TRANSCRIPTS_GpalI1.6.fa.gz Glossina pallidipes 12.67 MB Transcripts IAEA strain transcript sequences, GpalI1.6 geneset.
Glossina-pallidipes-IAEA_BASEFEATURES_GpalI1.6.gff3.gz Glossina pallidipes 2.81 MB Basefeatures IAEA strain GpalI1.6 geneset in GFF3 format.
Glossina-pallidipes-IAEA_BASEFEATURES_GpalI1.6.gtf.gz Glossina pallidipes 2.54 MB Basefeatures IAEA strain GpalI1.6 geneset in GTF (v2.2) format.
Glossina-pallidipes-IAEA_CONTIG2SCAFFOLD_GpalI1.agp.gz Glossina pallidipes 155.04 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina pallidipes IAEA strain, GpalI1.2 assembly.
Glossina-pallidipes-IAEA_MAPPINGS_GpalI1.3-GpalI1.4.txt Glossina pallidipes 21.99 KB ID Mapping Stable ID mapping between genesets GpalI1.3 and GpalI1.4 (RNA gene update)
Glossina-pallidipes-IAEA_REPEATS.lib Glossina pallidipes 1.36 MB RepeatMasker library RepeatMasker library file of repeats for Glossina pallidipes, IAEA strain.
Glossina-pallidipes-IAEA_REPEATFEATURES_GpalI1.gff3.gz Glossina pallidipes 17.14 MB Repeat features IAEA strain GpalI1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Glossina-palpalis-IAEA_CONTIGS_GpapI1.fa.gz Glossina palpalis 108.03 MB Contigs IAEA strain genomic contigs sequences, GpapI1 assembly.
Glossina-palpalis-IAEA_SCAFFOLDS_GpapI1.fa.gz Glossina palpalis 102.81 MB Scaffolds IAEA strain genomic scaffold sequences, GpapI1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Glossina-palpalis-IAEA_PEPTIDES_GpapI1.3.fa.gz Glossina palpalis 5.21 MB Peptides IAEA strain peptide sequences, GpapI1.3 geneset.
Glossina-palpalis-IAEA_TRANSCRIPTS_GpapI1.3.fa.gz Glossina palpalis 13.84 MB Transcripts IAEA strain transcript sequences, GpapI1.3 geneset.
Glossina-palpalis-IAEA_BASEFEATURES_GpapI1.3.gff3.gz Glossina palpalis 3.01 MB Basefeatures IAEA strain GpapI1.3 geneset in GFF3 format.
Glossina-palpalis-IAEA_BASEFEATURES_GpapI1.3.gtf.gz Glossina palpalis 2.59 MB Basefeatures IAEA strain GpapI1.3 geneset in GTF (v2.2) format.
Glossina-palpalis-IAEA_CONTIG2SCAFFOLD_GpapI1.agp.gz Glossina palpalis 755.77 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina palpalis IAEA strain, GpapI1.0 assembly.
Glossina-palpalis-IAEA_MAPPINGS_GpapI1.1-GpapI1.2.txt Glossina palpalis 22.92 KB ID Mapping Stable ID mapping between genesets GpapI1.1 and GpapI1.2 (RNA gene update)
Glossina-palpalis-IAEA_REPEATS.lib Glossina palpalis 1.3 MB RepeatMasker library RepeatMasker library file of repeats for Glossina palpalis, IAEA strain.
Glossina-palpalis-IAEA_REPEATFEATURES_GpapI1.gff3.gz Glossina palpalis 17.43 MB Repeat features IAEA strain GpapI1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Ixodes-ricinus-Charles-River_CONTIGS_JXMZ01.fa.gz Ixodes ricinus 119.56 MB Contigs Charles River isolate genome contig sequences, JXMZ01 assembly.
Ixodes-ricinus-Charles-River_TSA_GCJO01.fa.gz Ixodes ricinus 8.13 MB Assembled transcriptome TSA:GCJO00000000.1 from adult female midgut
Ixodes-ricinus-Branisov_TSA_GANP01.fa.gz Ixodes ricinus 4.23 MB Assembled transcriptome TSA:GANP00000000.1 from midgut and salivary glands

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