Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 101 - 150 of 662
Operations
File Organism Size Type Description
Anopheles-coluzzii-Mali-NIH_MAPPINGS_AcolM1.3-AcolM1.4.txt Anopheles coluzzii 18.97 KB ID Mapping Stable ID mapping between genesets AcolM1.3 and AcolM1.4 (RNA gene update)
Anopheles-coluzzii-Mali-NIH_REPEATS.lib Anopheles coluzzii 495.2 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles coluzzii, MALI-NIH strain.
Anopheles-coluzzii-Mali-NIH_REPEATFEATURES_AcolM1.gff3.gz Anopheles coluzzii 4.77 MB Repeat features Mali-NIH strain AcolM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-culicifacies-A-37_CONTIGS_AculA1.fa.gz Anopheles culicifacies A 56.31 MB Contigs A-37 strain genome contig sequences, AculA1 assembly.
Anopheles-culicifacies-A-37_SCAFFOLDS_AculA1.fa.gz Anopheles culicifacies A 56.71 MB Scaffolds A-37 strain genome scaffold sequences, AculA1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-culicifacies-A-37_PEPTIDES_AculA1.5.fa.gz Anopheles culicifacies A 4.56 MB Peptides A-37 strain peptide sequences, AculA1.5 geneset.
Anopheles-culicifacies-A-37_TRANSCRIPTS_AculA1.5.fa.gz Anopheles culicifacies A 6.88 MB Transcripts A-37 strain transcript sequences, AculA1.5 geneset.
Anopheles-culicifacies-A-37_BASEFEATURES_AculA1.5.gff3.gz Anopheles culicifacies A 2.34 MB Basefeatures A-37 strain AculA1.5 geneset in GFF3 format.
Anopheles-culicifacies-A-37_BASEFEATURES_AculA1.5.gtf.gz Anopheles culicifacies A 1.65 MB Basefeatures A-37 strain AculA1.5 geneset in GTF (v2.2) format.
Anopheles-culicifacies-A-37_CONTIG2SCAFFOLD_AculA1.agp.gz Anopheles culicifacies A 359.59 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles culicifacies A-37 strain, AculA1 assembly.
Anopheles-culicifacies-A-37_MAPPINGS_AculA1.3-AculA1.4.txt Anopheles culicifacies A 13.73 KB ID Mapping Stable ID mapping between genesets AculA1.3 and AculA1.4 (RNA gene update)
Anopheles-culicifacies-A-37_REPEATS.lib Anopheles culicifacies A 4.48 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles culicifacies, A-37 strain.
Anopheles-culicifacies-A-37_REPEATFEATURES_AculA1.gff3.gz Anopheles culicifacies A 2.87 MB Repeat features A-37 strain AculA1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-darlingi-Coari_CONTIGS_AdarC3.fa.gz Anopheles darlingi 41.53 MB Contigs Coari strain genomic contig sequences, AdarC3 assembly.
Anopheles-darlingi-Coari_SCAFFOLDS_AdarC3.fa.gz Anopheles darlingi 41.48 MB Scaffolds Coari strain genomic scaffold sequences, AdarC3 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-darlingi-Coari_PEPTIDES_AdarC3.7.fa.gz Anopheles darlingi 3.85 MB Peptides Coari strain peptide sequences, AdarC3.7 geneset.
Anopheles-darlingi-Coari_TRANSCRIPTS_AdarC3.7.fa.gz Anopheles darlingi 5.86 MB Transcripts Coari strain transcript sequences, AdarC3.7 geneset.
Anopheles-darlingi-Coari_BASEFEATURES_AdarC3.7.gff3.gz Anopheles darlingi 1.71 MB Basefeatures Coari strain AdarC3.7 geneset in GFF3 format.
Anopheles-darlingi-Coari_BASEFEATURES_AdarC3.7.gtf.gz Anopheles darlingi 1.33 MB Basefeatures Coari strain AdarC3.7 geneset in GTF (v2.2) format.
Anopheles-darlingi_EST-CLIPPED_2012-12.fa.gz Anopheles darlingi 881.54 KB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Anopheles-darlingi_EST-RAW_2012-12.fa.gz Anopheles darlingi 980.14 KB Raw Publicly submitted EST/cDNAs as of December 2012.
Anopheles-darlingi-Coari_CONTIG2SCAFFOLD_AdarC3.agp.gz Anopheles darlingi 99.17 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles darlingi Coari strain, AdarC3 assembly.
Anopheles-darlingi-Coari_MAPPINGS_AdarC3.3-AdarC3.4.txt Anopheles darlingi 5.9 KB ID Mapping Stable ID mapping between genesets AdarC3.3 and AdarC3.4 (RNA gene update)
Anopheles-darlingi-Coari_REPEATS.lib Anopheles darlingi 73.79 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles darlingi, Coari strain.
Anopheles-darlingi-Coari_REPEATFEATURES_AdarC3.gff3.gz Anopheles darlingi 2.36 MB Repeat features Coari strain AdarC3 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-dirus-WRAIR2_CONTIGS_AdirW1.fa.gz Anopheles dirus 60.08 MB Contigs WRAIR2 strain genomic contig sequences, AdirW1 assembly.
Anopheles-dirus-WRAIR2_SCAFFOLDS_AdirW1.fa.gz Anopheles dirus 60.08 MB Scaffolds WRAIR2 strain genomic scaffold sequences, AdirW1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-dirus-WRAIR2_PEPTIDES_AdirW1.7.fa.gz Anopheles dirus 4.43 MB Peptides WRAIR2 strain peptide sequences, AdirW1.7 geneset.
Anopheles-dirus-WRAIR2_TRANSCRIPTS_AdirW1.7.fa.gz Anopheles dirus 8.01 MB Transcripts WRAIR2 strain transcript sequences, AdirW1.7 geneset.
Anopheles-dirus-WRAIR2_BASEFEATURES_AdirW1.7.gff3.gz Anopheles dirus 1.87 MB Basefeatures WRAIR2 strain AdirW1.7 geneset in GFF3 format.
Anopheles-dirus-WRAIR2_BASEFEATURES_AdirW1.7.gtf.gz Anopheles dirus 1.6 MB Basefeatures WRAIR2 strain AdirW1.7 geneset in GTF (v2.2) format.
Anopheles-dirus-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles dirus 1.94 MB Assembled transcriptome 41061 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-dirus-WRAIR2_CONTIG2SCAFFOLD_AdirW1.agp.gz Anopheles dirus 200.87 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles dirus A WRAIR2 strain, AdirW1 assembly.
Anopheles-dirus-WRAIR2_MAPPINGS_AdirW1.3-AdirW1.4.txt Anopheles dirus 11.25 KB ID Mapping Stable ID mapping between genesets AdirW1.3 and AdirW1.4 (RNA gene update)
Anopheles-dirus-WRAIR2_REPEATS.lib Anopheles dirus 222.71 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles dirus, WRAIR2 strain.
Anopheles-dirus-WRAIR2_REPEATFEATURES_AdirW1.gff3.gz Anopheles dirus 3.25 MB Repeat features WRAIR2 strain AdirW1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-epiroticus-Epiroticus2_CONTIGS_AepiE1.fa.gz Anopheles epiroticus 61.73 MB Contigs Epiroticus2 strain genomic contig sequences, AepiE1 assembly.
Anopheles-epiroticus-Epiroticus2_SCAFFOLDS_AepiE1.fa.gz Anopheles epiroticus 62.03 MB Scaffolds Epiroticus2 strain genomic scaffold sequences, AepiE1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-epiroticus-Epiroticus2_PEPTIDES_AepiE1.6.fa.gz Anopheles epiroticus 4.25 MB Peptides Epiroticus2 strain peptide sequences, AepiE1.6 geneset.
Anopheles-epiroticus-Epiroticus2_TRANSCRIPTS_AepiE1.6.fa.gz Anopheles epiroticus 6.51 MB Transcripts Epiroticus2 strain transcript sequences, AepiE1.6 geneset.
Anopheles-epiroticus-Epiroticus2_BASEFEATURES_AepiE1.6.gff3.gz Anopheles epiroticus 1.69 MB Basefeatures Epiroticus2 strain AepiE1.6 geneset in GFF3 format.
Anopheles-epiroticus-Epiroticus2_BASEFEATURES_AepiE1.6.gtf.gz Anopheles epiroticus 1.38 MB Basefeatures Epiroticus2 strain AepiE1.6 geneset in GTF (v2.2) format.
Anopheles-epiroticus-Epiroticus2_CONTIG2SCAFFOLD_AepiE1.agp.gz Anopheles epiroticus 171.85 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles epiroticus, AepiE1 assembly.
Anopheles-epiroticus-Epiroticus2_MAPPINGS_AepiE1.3-AepiE1.4.txt Anopheles epiroticus 11.92 KB ID Mapping Stable ID mapping between genesets AepiE1.3 and AepiE1.4 (RNA gene update)
Anopheles-epiroticus-Epiroticus2_REPEATS.lib Anopheles epiroticus 231.83 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles epiroticus, Epiroticus2 strain.
Anopheles-epiroticus-Epiroticus2_REPEATFEATURES_AepiE1.gff3.gz Anopheles epiroticus 3.37 MB Repeat features Epiroticus2 strain AepiE1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-farauti-FAR1_CONTIGS_AfarF2.fa.gz Anopheles farauti 52.42 MB Contigs FAR1 strain genomic contig sequences, AfarF2 assembly.
Anopheles-farauti-FAR1_SCAFFOLDS_AfarF2.fa.gz Anopheles farauti 52.46 MB Scaffolds FAR1 strain genomic scaffold sequences, AfarF2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-farauti-FAR1_PEPTIDES_AfarF2.4.fa.gz Anopheles farauti 4.49 MB Peptides FAR1 strain peptide sequences, AfarF2.4 geneset.
Anopheles-farauti-FAR1_TRANSCRIPTS_AfarF2.4.fa.gz Anopheles farauti 8.89 MB Transcripts FAR1 strain transcript sequences, AfarF2.4 geneset.

Pages