Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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File Organism Size Type Description
anopheles_merus_unresolved_transcripts_2015_06.txt Anopheles merus 1.56 KB Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
anopheles_merus_projected_cdna_2015_06.fa Anopheles merus 25.55 MB Transcript projection cDNA sequence (from the old assembly) of projected transcripts.
anopheles_merus_projected_cds_2015_06.fa Anopheles merus 19.88 MB Transcript projection Coding sequence (from the old assembly) of projected transcripts.
anopheles_merus_projected_2015_06.gff3 Anopheles merus 9.63 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_merus_projected_pep_2015_06.fa Anopheles merus 6.83 MB Transcript projection Peptide sequence (from the old assembly) of projected transcripts.
anopheles_merus_README_2015_06.txt Anopheles merus 7.37 KB Transcript projection In VectorBase release 1506, Anopheles merus genes were projected from assembly version 1 (GCA_000473845.1) to assembly version 2 (GCA_000473845.2). This README file describes the...
anopheles_merus_report_2015_06.txt Anopheles merus 2.29 MB Transcript projection Description of the fate of every transcript in the old assembly, along with statistics to judge the quality and quantity of evidence. Columns: * transcript: stable ID * status:...
anopheles_merus_summary_2015_06.txt Anopheles merus 474 bytes Transcript projection A summary of the number of transcripts that could and could not be projected.
anopheles_merus_unprojected_cdna_2015_06.fa Anopheles merus 1.24 MB Transcript projection cDNA sequence (from the old assembly) of unprojected transcripts.
anopheles_merus_unprojected_cds_2015_06.fa Anopheles merus 1.08 MB Transcript projection Coding sequence (from the old assembly) of unprojected transcripts.
anopheles_merus_unprojected_2015_06.gff3 Anopheles merus 542.38 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_merus_unprojected_pep_2015_06.fa Anopheles merus 388.04 KB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Anopheles-merus_EXPR-STATS_VB-2018-12.txt.gz Anopheles merus 2.21 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-minimus-MINIMUS1_CONTIGS_AminM1.fa.gz Anopheles minimus 56.95 MB Contigs MINIMUS1 strain genomic contig sequences, AminM1 assembly.
Anopheles-minimus-MINIMUS1_SCAFFOLDS_AminM1.fa.gz Anopheles minimus 55.86 MB Scaffolds MINIMUS1 strain genomic scaffold sequences, AminM1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-minimus-MINIMUS1_PEPTIDES_AminM1.8.fa.gz Anopheles minimus 4.42 MB Peptides MINIMUS1 strain peptide sequences, AminM1.8 geneset.
Anopheles-minimus-MINIMUS1_TRANSCRIPTS_AminM1.8.fa.gz Anopheles minimus 8.23 MB Transcripts MINIMUS1 strain transcript sequences, AminM1.8 geneset.
Anopheles-minimus-MINIMUS1_BASEFEATURES_AminM1.8.gff3.gz Anopheles minimus 1.87 MB Basefeatures MINIMUS1 strain AminM1.8 geneset in GFF3 format.
Anopheles-minimus-MINIMUS1_BASEFEATURES_AminM1.8.gtf.gz Anopheles minimus 1.62 MB Basefeatures MINIMUS1 strain AminM1.8 geneset in GTF (v2.2) format.
Anopheles-minimus-MINIMUS1_CONTIG2SCAFFOLD_AminM1.agp.gz Anopheles minimus 155.19 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles minimus A strain, AminM1 assembly.
Anopheles-minimus-MINIMUS1_MAPPINGS_AminM1.3-AminM1.4.txt Anopheles minimus 18.41 KB ID Mapping Stable ID mapping between genesets AminM1.3 and AminM1.4 (RNA gene update)
Anopheles-minimus-MINIMUS1_REPEATS.lib Anopheles minimus 290.24 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles minimus, MINIMUS1 strain.
Anopheles-minimus-MINIMUS1_REPEATFEATURES_AminM1.gff3.gz Anopheles minimus 2.75 MB Repeat features MINIMUS1 strain AminM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-minimus_EXPR-STATS_VB-2018-12.txt.gz Anopheles minimus 847.65 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-nili-Dinderesso_CONTIGS_ATLZ01.fa.gz Anopheles nili 29.83 MB Contigs Dinderesso isolate genome contig sequences, ATLZ01 assembly.
Anopheles-punctulatus-APwgs2_CONTIGS_JXXA01.fa.gz Anopheles punctulatus 43.43 MB Contigs APwgs2 isolate genome contig sequences, JXXA01 assembly.
Anopheles-quadriannulatus-SANGWE_CONTIGS_AquaS1.fa.gz Anopheles quadriannulatus 64.25 MB Contigs SANGWE strain genomic contig sequences, AquaS1 assembly.
Anopheles-quadriannulatus-SANGWE_SCAFFOLDS_AquaS1.fa.gz Anopheles quadriannulatus 65.13 MB Scaffolds SANGWE strain genomic scaffold sequences, AquaS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-quadriannulatus-SANGWE_PEPTIDES_AquaS1.10.fa.gz Anopheles quadriannulatus 4.47 MB Peptides SANGWE strain peptide sequences, AquaS1.10 geneset.
Anopheles-quadriannulatus-SANGWE_TRANSCRIPTS_AquaS1.10.fa.gz Anopheles quadriannulatus 8.37 MB Transcripts SANGWE strain transcript sequences, AquaS1.10 geneset.
Anopheles-quadriannulatus-SANGWE_BASEFEATURES_AquaS1.10.gff3.gz Anopheles quadriannulatus 2.02 MB Basefeatures SANGWE strain AquaS1.10 geneset in GFF3 format.
Anopheles-quadriannulatus-SANGWE_BASEFEATURES_AquaS1.10.gtf.gz Anopheles quadriannulatus 1.66 MB Basefeatures SANGWE strain AquaS1.10 geneset in GTF (v2.2) format.
Anopheles-quadriannulatus-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles quadriannulatus 2.05 MB Assembled transcriptome 46058 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-quadriannulatus-SANGWE_CONTIG2SCAFFOLD_AquaS1.agp.gz Anopheles quadriannulatus 423.05 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles quadriannulatus SANGWE strain, AquaS1 assembly.
Anopheles-quadriannulatus-SANGWE_MAPPINGS_AquaS1.4-AquaS1.5.txt Anopheles quadriannulatus 9.65 KB ID Mapping Stable ID mapping between genesets AquaS1.4 and AquaS1.5 (RNA gene update)
Anopheles-quadriannulatus-SANGWE_REPEATS.lib Anopheles quadriannulatus 282.38 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles quadriannulatus, SANGWE strain.
Anopheles-quadriannulatus-SANGWE_REPEATFEATURES_AquaS1.gff3.gz Anopheles quadriannulatus 4.6 MB Repeat features SANGWE strain AquaS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-quadrimaculatus-Orlando_TSA_GBTE01.fa.gz Anopheles quadrimaculatus 4.27 MB Assembled transcriptome TSA:GBTE01000000.1 from multiple developmental stages.
Anopheles-quadrimaculatus-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles quadrimaculatus 3.59 MB Assembled transcriptome 82132 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-sinensis-China_CONTIGS_AsinC2.fa.gz Anopheles sinensis 64.74 MB Contigs China strain genomic contig sequences, AsinC2 assembly.
Anopheles-sinensis-SINENSIS_CONTIGS_AsinS2.fa.gz Anopheles sinensis 57.48 MB Contigs SINENSIS strain genomic contig sequences, AsinS2 assembly.
Anopheles-sinensis-China_SCAFFOLDS_AsinC2.fa.gz Anopheles sinensis 64.22 MB Scaffolds China strain genomic scaffolds sequences, AsinC2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-sinensis-SINENSIS_SCAFFOLDS_AsinS2.fa.gz Anopheles sinensis 60.07 MB Scaffolds SINENSIS strain genomic scaffold sequences, AsinS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-sinensis-SINENSIS_PEPTIDES_AsinS2.5.fa.gz Anopheles sinensis 3.85 MB Peptides SINENSIS strain peptide sequences, AsinS2.5 geneset.
Anopheles-sinensis-China_PEPTIDES_AsinC2.2.fa.gz Anopheles sinensis 4.67 MB Peptides China strain peptide sequences, AsinC2.2 geneset.
Anopheles-sinensis-SINENSIS_TRANSCRIPTS_AsinS2.5.fa.gz Anopheles sinensis 6.96 MB Transcripts SINENSIS strain transcript sequences, AsinS2.5 geneset.
Anopheles-sinensis-China_TRANSCRIPTS_AsinC2.2.fa.gz Anopheles sinensis 7.02 MB Transcripts China strain transcript sequences, AsinC2.2 geneset.
Anopheles-sinensis-SINENSIS_BASEFEATURES_AsinS2.5.gff3.gz Anopheles sinensis 2.03 MB Basefeatures SINENSIS strain AsinS2.5 geneset in GFF3 format.
Anopheles-sinensis-SINENSIS_BASEFEATURES_AsinS2.5.gtf.gz Anopheles sinensis 1.53 MB Basefeatures SINENSIS strain AsinS2.5 geneset in GTF (v2.2) format.
Anopheles-sinensis-China_BASEFEATURES_AsinC2.2.gff3.gz Anopheles sinensis 2.19 MB Basefeatures China strain AsinC2.2 geneset in GFF3 format.

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