Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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File Organism Size Type Description
Phlebotomus-papatasi-Israel_REPEATFEATURES_PpapI1.gff3.gz Phlebotomus papatasi 20.1 MB Repeat features Israel strain PpapI1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Rhipicephalus-microplus-Deutsch_CONTIGS_ADMZ02.fa.gz Rhipicephalus microplus 45.16 MB Contigs Deutsch isolate genome contig sequences, ADMZ02 assembly.
Rhodnius-prolixus-CDC_CONTIGS_RproC3.fa.gz Rhodnius prolixus 164.71 MB Contigs CDC strain genomic contig sequences, RproC3 assembly.
Rhodnius-prolixus-CDC_SCAFFOLDS_RproC3.fa.gz Rhodnius prolixus 165.33 MB Scaffolds CDC strain genomic scaffold sequences, RproC3 assembly, softmasked using RepeatMasker, Dust, and TRF.
Rhodnius-prolixus_TRACE_2008-11.fa.gz Rhodnius prolixus 1.56 GB Reads Submitted trace reads as of November 2007.
Rhodnius-prolixus-CDC_PEPTIDES_RproC3.3.fa.gz Rhodnius prolixus 3.46 MB Peptides CDC strain peptide sequences, RproC3.3 geneset.
Rhodnius-prolixus-CDC_TRANSCRIPTS_RproC3.3.fa.gz Rhodnius prolixus 5.47 MB Transcripts CDC strain transcript sequences, RproC3.3 geneset.
Rhodnius-prolixus-CDC_BASEFEATURES_RproC3.3.gff3.gz Rhodnius prolixus 2.84 MB Basefeatures CDC strain RproC3.3 geneset in GFF3 format.
Rhodnius-prolixus-CDC_BASEFEATURES_RproC3.3.gtf.gz Rhodnius prolixus 2.28 MB Basefeatures CDC strain RproC3.3 geneset in GTF (v2.2) format.
Rhodnius-prolixus_EST-CLIPPED_2012-12.fa.gz Rhodnius prolixus 2.46 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Rhodnius-prolixus_EST-RAW_2012-12.fa.gz Rhodnius prolixus 2.46 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Rhodnius-prolixus-NIAID_TSA_GAHY01.fa.gz Rhodnius prolixus 683.85 KB Assembled transcriptome TSA:GAHY00000000.1 from digestive tract
Rhodnius-prolixus-CDC_CONTIG2SCAFFOLD_RproC3.agp.gz Rhodnius prolixus 904.5 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Rhodnius prolixus CDC strain, RproC3 assembly.
Rhodnius-prolixus-CDC_MAPPINGS_RproC3.1-RproC3.2.txt Rhodnius prolixus 86.93 KB ID Mapping Stable ID mapping between genesets RproC3.1 and RproC3.2 (RNA gene update)
Rhodnius-prolixus-CDS_MODIFICATIONS_RproC1.1-RproC1.2-ncRNA.txt Rhodnius prolixus 168.82 KB ID Mapping CDC strain gene prediction stable identifier mapping for ncRNAs from RproC1.1 to RproC1.2.
Rhodnius-prolixus-CDC_REPEATS.lib Rhodnius prolixus 2.23 MB RepeatMasker library RepeatMasker library file of repeats for Rhodnius prolixus, CDC strain.
Rhodnius-prolixus-CDC_REPEATFEATURES_RproC3.gff3.gz Rhodnius prolixus 30.42 MB Repeat features CDC strain RproC3 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Rhodnius-prolixus-CDC_PROJECTED_CDNA_RproC3.1.fa.gz Rhodnius prolixus 5.08 MB Transcript projection cDNA sequence (from the old assembly) of projected transcripts.
Rhodnius-prolixus-CDC_PROJECTED_CDS_RproC3.1.fa.gz Rhodnius prolixus 4.78 MB Transcript projection Coding sequence (from the old assembly) of projected transcripts.
Rhodnius-prolixus-CDC_PROJECTED_FEATURES_RproC3.1.gff3.gz Rhodnius prolixus 1.68 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
Rhodnius-prolixus-CDC_PROJECTED_PEP_RproC3.1.fa.gz Rhodnius prolixus 3.11 MB Transcript projection Peptide sequence (from the old assembly) of projected transcripts.
Rhodnius-prolixus-CDC_PROJECTION_README_RproC3.1.txt Rhodnius prolixus 6.96 KB Transcript projection In VectorBase release 1508, Rhodnius prolixus genes were projected from assembly version 1 (GCA_000181055.2) to assembly version 3 (GCA_000181055.3). This README file describes...
Rhodnius-prolixus-CDC_PROJECTION_REPORT_RproC3.1.txt Rhodnius prolixus 3.02 MB Transcript projection Description of the fate of every transcript in the old assembly, along with statistics to judge the quality and quantity of evidence. Columns: * transcript: stable ID * status...
Rhodnius-prolixus-CDC_PROJECTION_SUMMARY_RproC3.1.txt Rhodnius prolixus 472 bytes Transcript projection A summary of the number of transcripts that could and could not be projected.
Rhodnius-prolixus-CDC_UNPROJECTED_CDNA_RproC3.1.fa.gz Rhodnius prolixus 91.89 KB Transcript projection cDNA sequence (from the old assembly) of unprojected transcripts.
Rhodnius-prolixus-CDC_UNPROJECTED_CDS_RproC3.1.fa.gz Rhodnius prolixus 82.68 KB Transcript projection Coding sequence (from the old assembly) of unprojected transcripts.
Rhodnius-prolixus-CDC_UNPROJECTED_FEATURES_RproC3.1.gff3.gz Rhodnius prolixus 22.1 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
Rhodnius-prolixus-CDC_UNPROJECTED_PEP_RproC3.1.fa.gz Rhodnius prolixus 52.85 KB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Rhodnius-prolixus-CDC_UNRESOLVED_TRANSCRIPTS_RproC3.1.txt Rhodnius prolixus 434 bytes Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
Sarcoptes-scabiei-Arlian_CONTIGS_SscaA1.fa.gz Sarcoptes scabiei 16.71 MB Contigs Arlian strain genomic contigs sequences, SscaA1 assembly.
Sarcoptes-scabiei-Arlian_SCAFFOLDS_SscaA1.fa.gz Sarcoptes scabiei 16.71 MB Scaffolds Arlian strain genomic scaffolds sequences, SscaA1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Sarcoptes-scabiei-Arlian_PEPTIDES_SscaA1.2.fa.gz Sarcoptes scabiei 2.66 MB Peptides Arlian strain peptide sequences, SscaA1.2 geneset.
Sarcoptes-scabiei-Arlian_TRANSCRIPTS_SscaA1.2.fa.gz Sarcoptes scabiei 4.03 MB Transcripts Arlian strain transcript sequences, SscaA1.2 geneset.
Sarcoptes-scabiei-Arlian_BASEFEATURES_SscaA1.2.gff3.gz Sarcoptes scabiei 1.68 MB Basefeatures Arlian strain SscaA1.2 geneset in GFF3 format.
Sarcoptes-scabiei-Arlian_BASEFEATURES_SscaA1.2.gtf.gz Sarcoptes scabiei 1.02 MB Basefeatures Arlian strain SscaA1.2 geneset in GTF (v2.2) format.
Sarcoptes-scabiei-Arlian_CONTIG2SCAFFOLD_SscaA1.agp.gz Sarcoptes scabiei 155.79 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Sarcoptes scabiei Arlian strain, SscaA1 assembly.
Sarcoptes-scabiei-var-canis-Arlian_MAPPINGS_SscaA1.1-SscaA1.2.txt Sarcoptes scabiei 6.19 KB ID Mapping Stable ID mapping between genesets SscaA1.1 and SscaA1.2 (RNA gene update)
Sarcoptes-scabiei-Arlian_REPEATS.lib Sarcoptes scabiei 7.45 KB RepeatMasker library RepeatMasker library file of repeats for Sarcoptes scabiei, Arlian strain.
Sarcoptes-scabiei-Arlian_REPEATFEATURES_SscaA1.gff3.gz Sarcoptes scabiei 3.27 MB Repeat features Arlian strain SscaA1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Stomoxys-calcitrans-USDA_CONTIGS_ScalU1.fa.gz Stomoxys calcitrans 237.83 MB Contigs USDA strain genome contig sequences, ScalU1 assembly.
Stomoxys-calcitrans-USDA_SCAFFOLDS_ScalU1.fa.gz Stomoxys calcitrans 254.86 MB Scaffolds USDA strain genomic scaffolds sequences, ScalU1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Stomoxys-calcitrans-USDA_PEPTIDES_ScalU1.5.fa.gz Stomoxys calcitrans 5.63 MB Peptides USDA strain peptide sequences, ScalU1.5 geneset.
Stomoxys-calcitrans-USDA_TRANSCRIPTS_ScalU1.5.fa.gz Stomoxys calcitrans 14.06 MB Transcripts USDA strain transcript sequences, ScalU1.5 geneset.
Stomoxys-calcitrans-USDA_BASEFEATURES_ScalU1.5.gff3.gz Stomoxys calcitrans 4.53 MB Basefeatures USDA strain ScalU1.5 geneset in GFF3 format.
Stomoxys-calcitrans-USDA_BASEFEATURES_ScalU1.5.gtf.gz Stomoxys calcitrans 3.16 MB Basefeatures USDA strain ScalU1.5 geneset in GTF (v2.2) format.
Stomoxys-calcitrans-8C7A2A5H3J4_TSA_GDIM01.fa.gz Stomoxys calcitrans 10.32 MB Assembled transcriptome TSA:GDIM00000000.1 pooled male and female whole animals
Stomoxys-calcitrans-USDA_CONTIG2SCAFFOLD_ScalU1.agp.gz Stomoxys calcitrans 3.03 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Stomoxys calcitrans USDA strain, ScalU1.1 assembly.
Stomoxys-calcitrans-USDA_MAPPINGS_ScalU1.1-ScalU1.2.txt Stomoxys calcitrans 12.57 KB ID Mapping Stable ID mapping between genesets ScalU1.1 and ScalU1.2 (RNA gene update)
Stomoxys-calcitrans-USDA_REPEATS.lib Stomoxys calcitrans 417.15 KB RepeatMasker library RepeatMasker library file of repeats for Stomoxys calcitrans, USDA strain.
Stomoxys-calcitrans-USDA_REPEATFEATURES_ScalU1.gff3.gz Stomoxys calcitrans 49.32 MB Repeat features USDA strain ScalU1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.

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