Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 44 of 44
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Operations
File Organism Size Type Description
Aedes-aegypti-Aag2-cell-line_CONTIG2SCAFFOLD_Aag2.agp.gz Aedes aegypti 28.36 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes aegypti Aag2 cell line strain, Aag2 assembly.
Aedes-aegypti-Liverpool_CONTIG2SCAFFOLD_AaegL3.agp.gz Aedes aegypti 878.29 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes aegypti Liverpool strain, AaegL3 assembly.
Aedes-aegypti-LVP_AGWG_SCAFFOLD2CHROMOSOME_AaegL5.agp.gz Aedes aegypti 18.17 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Aedes aegypti LVP_AGWG strain, AaegL5 assembly.
Aedes-albopictus-C6-36-cell-line_CONTIG2SCAFFOLD_GCA_001876365.2.agp.gz Aedes albopictus 21.59 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes albopictus C6/36 cell line strain, GCA_001876365.2 assembly.
Aedes-albopictus-Foshan_CONTIG2SCAFFOLD_AaloF1.agp.gz Aedes albopictus 6.03 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes albopictus Foshan strain, AaloF1 assembly.
Anopheles-albimanus-STECLA_SCAFFOLD2CHROMOSOME_AalbS2.agp.gz Anopheles albimanus 67.9 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles albimanus STECLA strain, AalbS2 assembly.
Anopheles-arabiensis-Dongola_CONTIG2SCAFFOLD_AaraD1.agp.gz Anopheles arabiensis 258.12 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles arabiensis Dongola strain, AaraD1 assembly.
Anopheles-atroparvus-EBRO_SCAFFOLD2CHROMOSOME_AatrE3.agp.gz Anopheles atroparvus 219.01 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles atroparvus EBRO strain, AatrE3 assembly.
Anopheles-christyi-ACHKN1017_CONTIG2SCAFFOLD_AchrA1.agp.gz Anopheles christyi 284.78 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles christyi ACHKN1017, AchrA1 assembly.
Anopheles-coluzzii-Mali-NIH_CONTIG2SCAFFOLD_AcolM1.agp.gz Anopheles coluzzii 544.12 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles coluzzii Mali-NIH strain, AcolM1.2 assembly.
Anopheles-culicifacies-A-37_CONTIG2SCAFFOLD_AculA1.agp.gz Anopheles culicifacies A 359.59 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles culicifacies A-37 strain, AculA1 assembly.
Anopheles-darlingi-Coari_CONTIG2SCAFFOLD_AdarC3.agp.gz Anopheles darlingi 99.17 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles darlingi Coari strain, AdarC3 assembly.
Anopheles-dirus-WRAIR2_CONTIG2SCAFFOLD_AdirW1.agp.gz Anopheles dirus 200.87 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles dirus A WRAIR2 strain, AdirW1 assembly.
Anopheles-epiroticus-Epiroticus2_CONTIG2SCAFFOLD_AepiE1.agp.gz Anopheles epiroticus 171.85 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles epiroticus, AepiE1 assembly.
Anopheles-farauti-FAR1_CONTIG2SCAFFOLD_AfarF2.agp.gz Anopheles farauti 76.72 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles farauti FAR1 strain, AfarF2.1 assembly.
Anopheles-funestus-FUMOZ_CONTIG2SCAFFOLD_AfunF1.agp.gz Anopheles funestus 238.95 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles funestus FUMOZ strain, AfunF1 assembly.
Anopheles-gambiae-Pimperena_CONTIG2SCAFFOLD_AgamS1.agp.gz Anopheles gambiae 452.53 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles gambiae Pimperena strain, AgamS1 assembly.
Anopheles-gambiae-PEST_SCAFFOLD2CHROMOSOME_AgamP4.agp.gz Anopheles gambiae 182.13 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles gambiae PEST strain, AgamP4 assembly.
Anopheles-maculatus-maculatus3_CONTIG2SCAFFOLD_AmacM1.agp.gz Anopheles maculatus 559.25 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles maculatus maculatus3 strain, AmacM1 assembly.
Anopheles-melas-CM1001059_A_CONTIG2SCAFFOLD_AmelC2.agp.gz Anopheles melas 439.33 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles melas CM1001059_A strain, AmelC2.1 assembly.
Anopheles-merus-MAF_CONTIG2SCAFFOLD_AmerM2.agp.gz Anopheles merus 319.99 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles merus MAF1 strain, AmerM2.1 assembly.
Anopheles-minimus-MINIMUS1_CONTIG2SCAFFOLD_AminM1.agp.gz Anopheles minimus 155.19 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles minimus A strain, AminM1 assembly.
Anopheles-quadriannulatus-SANGWE_CONTIG2SCAFFOLD_AquaS1.agp.gz Anopheles quadriannulatus 423.05 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles quadriannulatus SANGWE strain, AquaS1 assembly.
Anopheles-sinensis-SINENSIS_CONTIG2SCAFFOLD_AsinS2.agp.gz Anopheles sinensis 615.48 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles sinensis SINENSIS strain, AsinS2.1 assembly.
Anopheles-sinensis-China_CONTIG2SCAFFOLD_AsinC2.agp.gz Anopheles sinensis 548.56 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles sinensis China strain, AsinC2.1 assembly.
Anopheles-stephensi-SDA-500_CONTIG2SCAFFOLD_AsteS1.agp.gz Anopheles stephensi 221.19 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles stephensi SDA-500 strain, AsteS1 assembly.
Anopheles-stephensi-Indian_CONTIG2SCAFFOLD_AsteI2.agp.gz Anopheles stephensi 344 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles stephensi Indian strain, AsteI2.2 assembly.
Biomphalaria-glabrata-BB02_CONTIG2SCAFFOLD_BglaB1.agp.gz Biomphalaria glabrata 4.05 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Biomphalaria glabrata BB02 strain, BglaB1 assembly.
Cimex-lectularius-Harlan_CONTIG2SCAFFOLD_ClecH1.agp.gz Cimex lectularius 1.16 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Cimex lectularius Harlan strain, ClecH1 assembly.
Culex-quinquefasciatus-Johannesburg_CONTIG2SCAFFOLD_CpipJ2.agp.gz Culex quinquefasciatus 1.17 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Culex quinquefasciatus Johannesburg strain, CpipJ2 assembly.
Glossina-austeni-TTRI_CONTIG2SCAFFOLD_GausT1.agp.gz Glossina austeni 457.85 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina austeni TTRI strain, GausT1.2 assembly.
Glossina-brevipalpis-IAEA_CONTIG2SCAFFOLD_GbreI1.agp.gz Glossina brevipalpis 417.61 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina brevipalpis IAEA strain, GbreI1.2 assembly.
Glossina-fuscipes-IAEA_CONTIG2SCAFFOLD_GfusI1.agp.gz Glossina fuscipes 318.96 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina fuscipes IAEA strain, GfusI1.2 assembly.
Glossina-morsitans-Yale_CONTIG2SCAFFOLD_GmorY1.agp.gz Glossina morsitans 400.97 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina morsitans Yale strain, GmorY1 assembly.
Glossina-pallidipes-IAEA_CONTIG2SCAFFOLD_GpalI1.agp.gz Glossina pallidipes 155.04 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina pallidipes IAEA strain, GpalI1.2 assembly.
Glossina-palpalis-IAEA_CONTIG2SCAFFOLD_GpapI1.agp.gz Glossina palpalis 755.77 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Glossina palpalis IAEA strain, GpapI1.0 assembly.
Ixodes-scapularis-Wikel_CONTIG2SCAFFOLD_IscaW1.agp.gz Ixodes scapularis 10.07 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Ixodes scapularis Wikel strain, IscaW1 assembly.
Lutzomyia-longipalpis-Jacobina_CONTIG2SCAFFOLD_LlonJ1.agp.gz Lutzomyia longipalpis 698.19 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Lutzomyia longipalpis Jacobina strain, LlonJ1 assembly.
Musca-domestica-aabys_CONTIG2SCAFFOLD_MdomA1.agp.gz Musca domestica 2.23 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Musca domestica Aabys strain, MdomA1.1 assembly.
Pediculus-humanus-USDA_CONTIG2SCAFFOLD_PhumU2.agp.gz Pediculus humanus 192.79 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Pediculus humanus USDA strain, PhumU2 assembly.
Phlebotomus-papatasi-Israel_CONTIG2SCAFFOLD_PpapI1.agp.gz Phlebotomus papatasi 1.65 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Phlebotomus papatasi Israel strain, PpapI1 assembly.
Rhodnius-prolixus-CDC_CONTIG2SCAFFOLD_RproC3.agp.gz Rhodnius prolixus 904.5 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Rhodnius prolixus CDC strain, RproC3 assembly.
Sarcoptes-scabiei-Arlian_CONTIG2SCAFFOLD_SscaA1.agp.gz Sarcoptes scabiei 155.79 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Sarcoptes scabiei Arlian strain, SscaA1 assembly.
Stomoxys-calcitrans-USDA_CONTIG2SCAFFOLD_ScalU1.agp.gz Stomoxys calcitrans 3.03 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Stomoxys calcitrans USDA strain, ScalU1.1 assembly.