Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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File Organism Size Type Description
Anopheles-minimus-MINIMUS1_REPEATFEATURES_AminM1.gff3.gz Anopheles minimus 2.75 MB Repeat features MINIMUS1 strain AminM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-minimus_EXPR-STATS_VB-2019-06.txt.gz Anopheles minimus 847.44 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-nili-Dinderesso_CONTIGS_ATLZ01.fa.gz Anopheles nili 29.83 MB Contigs Dinderesso isolate genome contig sequences, ATLZ01 assembly.
Anopheles-punctulatus-APwgs2_CONTIGS_JXXA01.fa.gz Anopheles punctulatus 43.43 MB Contigs APwgs2 isolate genome contig sequences, JXXA01 assembly.
Anopheles-quadriannulatus-SANGWE_CONTIGS_AquaS1.fa.gz Anopheles quadriannulatus 64.25 MB Contigs SANGWE strain genomic contig sequences, AquaS1 assembly.
Anopheles-quadriannulatus-SANGWE_SCAFFOLDS_AquaS1.fa.gz Anopheles quadriannulatus 65.13 MB Scaffolds SANGWE strain genomic scaffold sequences, AquaS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-quadriannulatus-SANGWE_PEPTIDES_AquaS1.11.fa.gz Anopheles quadriannulatus 4.49 MB Peptides SANGWE strain peptide sequences, AquaS1.11 geneset.
Anopheles-quadriannulatus-SANGWE_TRANSCRIPTS_AquaS1.11.fa.gz Anopheles quadriannulatus 8.53 MB Transcripts SANGWE strain transcript sequences, AquaS1.11 geneset.
Anopheles-quadriannulatus-SANGWE_BASEFEATURES_AquaS1.11.gff3.gz Anopheles quadriannulatus 2.04 MB Basefeatures SANGWE strain AquaS1.11 geneset in GFF3 format.
Anopheles-quadriannulatus-SANGWE_BASEFEATURES_AquaS1.11.gtf.gz Anopheles quadriannulatus 1.68 MB Basefeatures SANGWE strain AquaS1.11 geneset in GTF (v2.2) format.
Anopheles-quadriannulatus-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles quadriannulatus 2.05 MB Assembled transcriptome 46058 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-quadriannulatus-SANGWE_CONTIG2SCAFFOLD_AquaS1.agp.gz Anopheles quadriannulatus 423.05 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles quadriannulatus SANGWE strain, AquaS1 assembly.
Anopheles-quadriannulatus-SANGWE_MAPPINGS_AquaS1.4-AquaS1.5.txt Anopheles quadriannulatus 9.65 KB ID Mapping Stable ID mapping between genesets AquaS1.4 and AquaS1.5 (RNA gene update)
Anopheles-quadriannulatus-SANGWE_REPEATS.lib Anopheles quadriannulatus 282.38 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles quadriannulatus, SANGWE strain.
Anopheles-quadriannulatus-SANGWE_REPEATFEATURES_AquaS1.gff3.gz Anopheles quadriannulatus 4.6 MB Repeat features SANGWE strain AquaS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-quadrimaculatus-Orlando_TSA_GBTE01.fa.gz Anopheles quadrimaculatus 4.27 MB Assembled transcriptome TSA:GBTE01000000.1 from multiple developmental stages.
Anopheles-quadrimaculatus-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles quadrimaculatus 3.59 MB Assembled transcriptome 82132 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-sinensis-China_CONTIGS_AsinC2.fa.gz Anopheles sinensis 64.74 MB Contigs China strain genomic contig sequences, AsinC2 assembly.
Anopheles-sinensis-SINENSIS_CONTIGS_AsinS2.fa.gz Anopheles sinensis 57.48 MB Contigs SINENSIS strain genomic contig sequences, AsinS2 assembly.
Anopheles-sinensis-China_SCAFFOLDS_AsinC2.fa.gz Anopheles sinensis 64.22 MB Scaffolds China strain genomic scaffolds sequences, AsinC2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-sinensis-SINENSIS_SCAFFOLDS_AsinS2.fa.gz Anopheles sinensis 60.07 MB Scaffolds SINENSIS strain genomic scaffold sequences, AsinS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-sinensis-SINENSIS_PEPTIDES_AsinS2.5.fa.gz Anopheles sinensis 3.85 MB Peptides SINENSIS strain peptide sequences, AsinS2.5 geneset.
Anopheles-sinensis-China_PEPTIDES_AsinC2.2.fa.gz Anopheles sinensis 4.67 MB Peptides China strain peptide sequences, AsinC2.2 geneset.
Anopheles-sinensis-SINENSIS_TRANSCRIPTS_AsinS2.5.fa.gz Anopheles sinensis 6.96 MB Transcripts SINENSIS strain transcript sequences, AsinS2.5 geneset.
Anopheles-sinensis-China_TRANSCRIPTS_AsinC2.2.fa.gz Anopheles sinensis 7.02 MB Transcripts China strain transcript sequences, AsinC2.2 geneset.

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