Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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Operations
File Organism Size Type Description
Ixodes-scapularis_EST-RAW_2012-12.fa.gz Ixodes scapularis 46.11 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Ixodes-scapularis-Wikel_TSA_GBBN01.fa.gz Ixodes scapularis 6.07 MB Assembled transcriptome TSA:GBBN00000000.1 from female synganglion
Ixodes-scapularis-Wikel_BAC-ENDS_2012-12.fa.gz Ixodes scapularis 172.2 MB BAC ends Wikel strain BAC end sequences from the NCBI trace archive as of December 2012.
Ixodes-scapularis-ISE6_CONTIG2SCAFFOLD_IscaI1.agp.gz Ixodes scapularis 73.6 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Ixodes scapularis ISE6 strain, IscaI1 assembly.
Ixodes-scapularis-Wikel_CONTIG2SCAFFOLD_IscaW1.agp.gz Ixodes scapularis 10.07 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Ixodes scapularis Wikel strain, IscaW1 assembly.
Ixodes-scapularis-Wikel_MAPPINGS_IscaW1.4-IscaW1.5.txt Ixodes scapularis 136.18 KB ID Mapping Stable ID mapping between genesets IscaW1.4 and IscaW1.5 (RNA gene update)
Ixodes-scapularis-Wikel_MODIFICATIONS_IscaW1.2-IscaW1.3-ncRNA.txt Ixodes scapularis 332.02 KB ID Mapping Wikel strain gene prediction stable identifier mapping for ncRNAs from IscaW1.2 to IscaW1.3.
Ixodes-scapularis-Wikel_REPEATS.lib Ixodes scapularis 12.4 MB RepeatMasker library RepeatMasker library file of repeats for Ixodes scapularis, Wikel strain.
Ixodes-scapularis-ISE6_NONREFREPEATFEATURES_IscaI1.gff3.gz Ixodes scapularis 59.28 MB Repeat features ISE6 strain IscaI1 repeat features (RepeatMasker, Dust, TRF) for non_ref_scaffolds in GFF3 format.
Ixodes-scapularis-ISE6_REPEATFEATURES_IscaI1.gff3.gz Ixodes scapularis 125.22 MB Repeat features ISE6 strain IscaI1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Ixodes-scapularis-Wikel_REPEATFEATURES_IscaW1.gff3.gz Ixodes scapularis 77.16 MB Repeat features Wikel strain IscaW1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Ixodes_scapularis_TEs_version_1.0.txt Ixodes scapularis 3.37 MB Transposable elements Ixodes scapularis TEs (transposable elements) version 1.0 This file contains fasta sequences of TEs combined from sequences provided from different groups. The methods/criteria...
Ixodes-scapularis_EXPR-STATS_VB-2019-06.txt.gz Ixodes scapularis 1.75 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Ixodes-scapularis-ISE6_NONREFSCAFFOLDS_IscaI1.fa.gz Ixodes scapularis 308.47 MB ISE6 strain genomic nonrefscaffolds sequences, IscaI1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Leptotrombidium-deliense-UoL-UT_CONTIGS_LdelU1.fa.gz Leptotrombidium deliense 36.45 MB Contigs UoL-UT strain genomic contigs sequences, LdelU1 assembly.
Leptotrombidium-deliense-UoL-UT_SCAFFOLDS_LdelU1.fa.gz Leptotrombidium deliense 36.44 MB Scaffolds UoL-UT strain genomic scaffolds sequences, LdelU1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Leptotrombidium-deliense-UoL-UT_PEPTIDES_LdelU1.1.fa.gz Leptotrombidium deliense 3.42 MB Peptides UoL-UT strain peptide sequences, LdelU1.1 geneset.
Leptotrombidium-deliense-UoL-UT_TRANSCRIPTS_LdelU1.1.fa.gz Leptotrombidium deliense 5.07 MB Transcripts UoL-UT strain transcript sequences, LdelU1.1 geneset.
Leptotrombidium-deliense-UoL-UT_BASEFEATURES_LdelU1.1.gff3.gz Leptotrombidium deliense 2.68 MB Basefeatures UoL-UT strain LdelU1.1 geneset in GFF3 format.
Leptotrombidium-deliense-UoL-UT_BASEFEATURES_LdelU1.1.gtf.gz Leptotrombidium deliense 1.27 MB Basefeatures UoL-UT strain LdelU1.1 geneset in GTF (v2.2) format.
Leptotrombidium-deliense-UoL-UT_CONTIG2SCAFFOLD_LdelU1.agp.gz Leptotrombidium deliense 375.2 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Leptotrombidium deliense UoL-UT strain, LdelU1 assembly.
Leptotrombidium-deliense-UoL-UT_REPEATS.lib.gz Leptotrombidium deliense 380.46 KB RepeatMasker library RepeatMasker library file of repeats for Leptotrombidium deliense.
Leptotrombidium-deliense-UoL-UT_REPEATFEATURES_LdelU1.gff3.gz Leptotrombidium deliense 3.44 MB Repeat features UoL-UT strain LdelU1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Lutzomyia-longipalpis-Jacobina_CONTIGS_LlonJ1.fa.gz Lutzomyia longipalpis 41.74 MB Contigs Jacobina strain genomic contig sequences, LlonJ1 assembly.
Lutzomyia-longipalpis-Jacobina_SCAFFOLDS_LlonJ1.fa.gz Lutzomyia longipalpis 42.88 MB Scaffolds Jacobina strain genomic scaffold sequences, LlonJ1 assembly, softmasked using RepeatMasker, Dust, and TRF.

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