Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 501 - 525 of 718
Double-click species to show assemblies
Operations
File Organism Size Type Description
Lutzomyia-longipalpis-Jacobina_PEPTIDES_LlonJ1.5.fa.gz Lutzomyia longipalpis 3.08 MB Peptides Jacobina strain peptide sequences, LlonJ1.5 geneset.
Lutzomyia-longipalpis-Jacobina_TRANSCRIPTS_LlonJ1.5.fa.gz Lutzomyia longipalpis 7.14 MB Transcripts Jacobina strain transcript sequences, LlonJ1.5 geneset.
Lutzomyia-longipalpis-Jacobina_BASEFEATURES_LlonJ1.5.gff3.gz Lutzomyia longipalpis 1.87 MB Basefeatures Jacobina strain LlonJ1.5 geneset in GFF3 format.
Lutzomyia-longipalpis-Jacobina_BASEFEATURES_LlonJ1.5.gtf.gz Lutzomyia longipalpis 1.45 MB Basefeatures Jacobina strain LlonJ1.5 geneset in GTF (v2.2) format.
Lutzomyia-longipalpis_EST-CLIPPED_2012-12.fa.gz Lutzomyia longipalpis 10.81 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Lutzomyia-longipalpis_EST-RAW_2012-12.fa.gz Lutzomyia longipalpis 10.87 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Lutzomyia-longipalpis-Jacobina_BAC-ENDS_Dec12.fa.gz Lutzomyia longipalpis 26.4 MB BAC ends Jacobina strain BAC end sequences from the NCBI trace archive as of December 2012.
Lutzomyia-longipalpis_EST-ASMBLD_2011-10-07.fa.gz Lutzomyia longipalpis 2.46 MB Assembled Two step assembly with different stringencies, using CAP3. Prior to assembly the sequences were cleaned and trimmed using Lucy and SeqClean. Cap3 assmbler used ( -p 80 -o 20 -z 1...
Lutzomyia-longipalpis-Jacobina_CONTIG2SCAFFOLD_LlonJ1.agp.gz Lutzomyia longipalpis 698.19 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Lutzomyia longipalpis Jacobina strain, LlonJ1 assembly.
Lutzomyia-longipalpis-Jacobina_MAPPINGS_LlonJ1.2-LlonJ1.3.txt Lutzomyia longipalpis 12.4 KB ID Mapping Stable ID mapping between genesets LlonJ1.2 and LlonJ1.3 (RNA gene update)
Lutzomyia-longipalpis-Jacobina_MAPPINGS_LlonJ1.0_LlonJ1.2.txt Lutzomyia longipalpis 375.2 KB ID Mapping Jacobina strain transcript stable identifier mapping from the preliminary LlonJ1.0 to release LlonJ1.2 geneset. The last four columns of the file indicate whether the following...
Lutzomyia-longipalpis-Jacobina_REPEATS.lib Lutzomyia longipalpis 352.44 KB RepeatMasker library RepeatMasker library file of repeats for Lutzomyia longipalpis, Jacobina strain.
Lutzomyia-longipalpis-Jacobina_REPEATFEATURES_LlonJ1.gff3.gz Lutzomyia longipalpis 4.76 MB Repeat features Jacobina strain LlonJ1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Musca-domestica-aabys_CONTIGS_MdomA1.fa.gz Musca domestica 195.5 MB Contigs Aabys strain genomic contig sequences, MdomA1 assembly.
Musca-domestica-aabys_SCAFFOLDS_MdomA1.fa.gz Musca domestica 187.53 MB Scaffolds Aabys strain genomic scaffold sequences, MdomA1 assembly, softmasked using WindowMasker, Dust, and TRF.
Musca-domestica-aabys_PEPTIDES_MdomA1.3.fa.gz Musca domestica 5.39 MB Peptides aabys strain peptide sequences, MdomA1.3 geneset.
Musca-domestica-aabys_TRANSCRIPTS_MdomA1.3.fa.gz Musca domestica 11.5 MB Transcripts aabys strain transcript sequences, MdomA1.3 geneset.
Musca-domestica-aabys_BASEFEATURES_MdomA1.3.gff3.gz Musca domestica 4.45 MB Basefeatures aabys strain MdomA1.3 geneset in GFF3 format.
Musca-domestica-aabys_BASEFEATURES_MdomA1.3.gtf.gz Musca domestica 2.67 MB Basefeatures aabys strain MdomA1.3 geneset in GTF (v2.2) format.
Musca-domestica_TSA_GDAV01.fa.gz Musca domestica 13.64 MB Assembled transcriptome TSA:GDAV00000000.1 pooled male and female larvae, pupae and adults.
Musca-domestica-aabys_CONTIG2SCAFFOLD_MdomA1.agp.gz Musca domestica 2.23 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Musca domestica Aabys strain, MdomA1.1 assembly.
Musca-domestica-aabys_MAPPINGS_MdomA1.2-MdomA1.3.txt Musca domestica 17.69 KB ID Mapping Stable ID mapping between genesets MdomA1.2 and MdomA1.3 (RNA gene update)
Musca-domestica-aabys_REPEATFEATURES_MdomA1.gff3.gz Musca domestica 64.15 MB Repeat features aabys strain repeat features (WindowMasker, Dust, TRF) in GFF3 format.
Musca-domestica_EXPR-STATS_VB-2019-06.txt.gz Musca domestica 1.95 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Pediculus-humanus-USDA_CONTIGS_PhumU2.fa.gz Pediculus humanus 31.55 MB Contigs USDA strain genomic contig sequences, PhumU2 assembly.

Pages