Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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File Organism Size Type Description
Pediculus-humanus-USDA_SCAFFOLDS_PhumU2.fa.gz Pediculus humanus 31.5 MB Scaffolds USDA strain genomic scaffold sequences, PhumU2 assembly, softmasked using Dust and TRF.
Pediculus-humanus-USDA_PEPTIDES_PhumU2.4.fa.gz Pediculus humanus 3.55 MB Peptides USDA strain peptide sequences, PhumU2.4 geneset.
Pediculus-humanus-USDA_TRANSCRIPTS_PhumU2.4.fa.gz Pediculus humanus 5.32 MB Transcripts USDA strain transcript sequences, PhumU2.4 geneset.
Pediculus-humanus-USDA_BASEFEATURES_PhumU2.4.gff3.gz Pediculus humanus 2.08 MB Basefeatures USDA strain PhumU2.4 geneset in GFF3 format.
Pediculus-humanus-USDA_BASEFEATURES_PhumU2.4.gtf.gz Pediculus humanus 1.69 MB Basefeatures USDA strain PhumU2.4 geneset in GTF (v2.2) format.
Pediculus-humanus_EST-CLIPPED_2012-12.fa.gz Pediculus humanus 188.47 KB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Pediculus-humanus_EST-RAW_2012-12.fa.gz Pediculus humanus 188.9 KB Raw Publicly submitted EST/cDNAs as of December 2012.
Pediculus-humanus-USDA_CONTIG2SCAFFOLD_PhumU2.agp.gz Pediculus humanus 192.79 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Pediculus humanus USDA strain, PhumU2 assembly.
Pediculus-humanus-USDA_MAPPINGS_PhumU2.1-PhumU2.2.txt Pediculus humanus 61.41 KB ID Mapping Stable ID mapping between genesets PhumU2.1 and PhumU2.2 (RNA gene update)
Pediculus-humanus-USDA_REPEATS.lib Pediculus humanus 97.52 KB RepeatMasker library RepeatMasker library file of repeats for Pediculus humanus, USDA strain.
Pediculus-humanus-USDA_REPEATFEATURES_PhumU2.gff3.gz Pediculus humanus 10.14 MB Repeat features USDA strain PhumU2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Phlebotomus-papatasi-Israel_CONTIGS_PpapI1.fa.gz Phlebotomus papatasi 109.63 MB Contigs Israel strain genomic contigs sequences, PpapI1 assembly.
Phlebotomus-papatasi-Israel_SCAFFOLDS_PpapI1.fa.gz Phlebotomus papatasi 111.67 MB Scaffolds Israel strain genomic scaffold sequences, PpapI1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Phlebotomus-papatasi-Israel_PEPTIDES_PpapI1.5.fa.gz Phlebotomus papatasi 2.68 MB Peptides Israel strain peptide sequences, PpapI1.5 geneset.
Phlebotomus-papatasi-Israel_TRANSCRIPTS_PpapI1.5.fa.gz Phlebotomus papatasi 4.38 MB Transcripts Israel strain transcript sequences, PpapI1.5 geneset.
Phlebotomus-papatasi-Israel_BASEFEATURES_PpapI1.5.gff3.gz Phlebotomus papatasi 2.96 MB Basefeatures Israel strain PpapI1.5 geneset in GFF3 format.
Phlebotomus-papatasi-Israel_BASEFEATURES_PpapI1.5.gtf.gz Phlebotomus papatasi 1.18 MB Basefeatures Israel strain PpapI1.5 geneset in GTF (v2.2) format.
Phlebotomus-papatasi_EST-CLIPPED_2012-12.fa.gz Phlebotomus papatasi 12.82 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Phlebotomus-papatasi_EST-RAW_2012-12.fa.gz Phlebotomus papatasi 12.87 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Phlebotomus-papatasi-Israel_BAC-ENDS_2012-12.fa.gz Phlebotomus papatasi 6.55 MB BAC ends Israel strain BAC end sequences from the NCBI trace archive as of December 2012.
Phlebotomus-papatasi_EST-ASMBLD_2011-10-07.fa.gz Phlebotomus papatasi 3.61 MB Assembled Two step assembly with different stringencies, using CAP3. Prior to assembly the sequences were cleaned and trimmed using Lucy and SeqClean. Cap3 assembler used ( -p 80 -o 20 -z...
Phlebotomus-papatasi-Israel_CONTIG2SCAFFOLD_PpapI1.agp.gz Phlebotomus papatasi 1.65 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Phlebotomus papatasi Israel strain, PpapI1 assembly.
Phlebotomus-papatasi-Israel_MAPPINGS_PpapI1.2-PpapI1.3.txt Phlebotomus papatasi 86.88 KB ID Mapping Stable ID mapping between genesets PpapI1.2 and PpapI1.3 (RNA gene update)
Phlebotomus-papatasi-Israel_MAPPINGS_PpapI1.0_PpapI1.2.txt Phlebotomus papatasi 414.32 KB ID Mapping Israel strain transcript stable identifier mapping from the preliminary PpapI1.0 to release PpapI1.2 geneset. The last four columns of the file indicate whether the following...
Phlebotomus-papatasi-Israel_REPEATS.lib Phlebotomus papatasi 559.85 KB RepeatMasker library RepeatMasker library file of repeats for Phlebotomus papatasi, Israel strain.

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