Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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Operations
File Organism Size Type Description
Rhodnius-prolixus-CDC_UNPROJECTED_CDS_RproC3.1.fa.gz Rhodnius prolixus 82.68 KB Transcript projection Coding sequence (from the old assembly) of unprojected transcripts.
Rhodnius-prolixus-CDC_UNPROJECTED_FEATURES_RproC3.1.gff3.gz Rhodnius prolixus 22.1 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
Rhodnius-prolixus-CDC_UNPROJECTED_PEP_RproC3.1.fa.gz Rhodnius prolixus 52.85 KB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Rhodnius-prolixus-CDC_UNRESOLVED_TRANSCRIPTS_RproC3.1.txt Rhodnius prolixus 434 bytes Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
Sarcoptes-scabiei-Arlian_CONTIGS_SscaA1.fa.gz Sarcoptes scabiei 16.71 MB Contigs Arlian strain genomic contigs sequences, SscaA1 assembly.
Sarcoptes-scabiei-Arlian_SCAFFOLDS_SscaA1.fa.gz Sarcoptes scabiei 16.71 MB Scaffolds Arlian strain genomic scaffolds sequences, SscaA1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Sarcoptes-scabiei-Arlian_PEPTIDES_SscaA1.2.fa.gz Sarcoptes scabiei 2.66 MB Peptides Arlian strain peptide sequences, SscaA1.2 geneset.
Sarcoptes-scabiei-Arlian_TRANSCRIPTS_SscaA1.2.fa.gz Sarcoptes scabiei 4.03 MB Transcripts Arlian strain transcript sequences, SscaA1.2 geneset.
Sarcoptes-scabiei-Arlian_BASEFEATURES_SscaA1.2.gff3.gz Sarcoptes scabiei 1.68 MB Basefeatures Arlian strain SscaA1.2 geneset in GFF3 format.
Sarcoptes-scabiei-Arlian_BASEFEATURES_SscaA1.2.gtf.gz Sarcoptes scabiei 1.02 MB Basefeatures Arlian strain SscaA1.2 geneset in GTF (v2.2) format.
Sarcoptes-scabiei-Arlian_CONTIG2SCAFFOLD_SscaA1.agp.gz Sarcoptes scabiei 155.79 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Sarcoptes scabiei Arlian strain, SscaA1 assembly.
Sarcoptes-scabiei-var-canis-Arlian_MAPPINGS_SscaA1.1-SscaA1.2.txt Sarcoptes scabiei 6.19 KB ID Mapping Stable ID mapping between genesets SscaA1.1 and SscaA1.2 (RNA gene update)
Sarcoptes-scabiei-Arlian_REPEATS.lib Sarcoptes scabiei 7.45 KB RepeatMasker library RepeatMasker library file of repeats for Sarcoptes scabiei, Arlian strain.
Sarcoptes-scabiei-Arlian_REPEATFEATURES_SscaA1.gff3.gz Sarcoptes scabiei 3.27 MB Repeat features Arlian strain SscaA1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Stomoxys-calcitrans-USDA_CONTIGS_ScalU1.fa.gz Stomoxys calcitrans 237.83 MB Contigs USDA strain genome contig sequences, ScalU1 assembly.
Stomoxys-calcitrans-USDA_SCAFFOLDS_ScalU1.fa.gz Stomoxys calcitrans 254.86 MB Scaffolds USDA strain genomic scaffolds sequences, ScalU1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Stomoxys-calcitrans-USDA_PEPTIDES_ScalU1.5.fa.gz Stomoxys calcitrans 5.63 MB Peptides USDA strain peptide sequences, ScalU1.5 geneset.
Stomoxys-calcitrans-USDA_TRANSCRIPTS_ScalU1.5.fa.gz Stomoxys calcitrans 14.06 MB Transcripts USDA strain transcript sequences, ScalU1.5 geneset.
Stomoxys-calcitrans-USDA_BASEFEATURES_ScalU1.5.gff3.gz Stomoxys calcitrans 4.53 MB Basefeatures USDA strain ScalU1.5 geneset in GFF3 format.
Stomoxys-calcitrans-USDA_BASEFEATURES_ScalU1.5.gtf.gz Stomoxys calcitrans 3.16 MB Basefeatures USDA strain ScalU1.5 geneset in GTF (v2.2) format.
Stomoxys-calcitrans-8C7A2A5H3J4_TSA_GDIM01.fa.gz Stomoxys calcitrans 10.32 MB Assembled transcriptome TSA:GDIM00000000.1 pooled male and female whole animals
Stomoxys-calcitrans-USDA_CONTIG2SCAFFOLD_ScalU1.agp.gz Stomoxys calcitrans 3.03 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Stomoxys calcitrans USDA strain, ScalU1.1 assembly.
Stomoxys-calcitrans-USDA_MAPPINGS_ScalU1.1-ScalU1.2.txt Stomoxys calcitrans 12.57 KB ID Mapping Stable ID mapping between genesets ScalU1.1 and ScalU1.2 (RNA gene update)
Stomoxys-calcitrans-USDA_REPEATS.lib Stomoxys calcitrans 417.15 KB RepeatMasker library RepeatMasker library file of repeats for Stomoxys calcitrans, USDA strain.
Stomoxys-calcitrans-USDA_REPEATFEATURES_ScalU1.gff3.gz Stomoxys calcitrans 49.32 MB Repeat features USDA strain ScalU1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.

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