Anopheles-quadriannulatus-AquaS1_superscaffolded.tar.gz
63.93 MB
Other
Superscaffolded assembly data for Anopheles-quadriannulatus-AquaS1 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome...
Anopheles-sinensis-AsinC2_superscaffolded.tar.gz
65.95 MB
Other
Superscaffolded assembly data for Anopheles-sinensis-AsinC2 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies...
Anopheles-sinensis-AsinS2_superscaffolded.tar.gz
61.38 MB
Other
Superscaffolded assembly data for Anopheles-sinensis-AsinS2 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies...
Anopheles-stephensi-AsteI2_superscaffolded.tar.gz
64.7 MB
Other
Superscaffolded assembly data for Anopheles-stephensi-Astel2 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies...
Anopheles-stephensi-AsteS1_superscaffolded.tar.gz
60.65 MB
Other
Superscaffolded assembly data for Anopheles-stephensi-AsteS1 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies...
Anopheles-merus-AmerM2_superscaffolded.tar.gz
68.2 MB
Other
Superscaffolded assembly data for Anopheles-merus-AmerM2 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies",...
PopBio-Map-Data-Dictionary-2019-09.pdf
77.94 KB
Other
There are 5 specialized views in PopBio Map to reflect the major kinds of data contained within our database.
Each data type will have different associated fields, although some...
ANATOMY_TGMA1.12_2013-06.obo.gz
133.59 KB
Anatomy
Mosquito anatomy ontology.
ANATOMY_TADS1.22_2013-04.obo.gz
45.28 KB
Anatomy
Tick Gross Anatomy.
MALARIA_IDOMAL1.3.9_2015-03.obo.gz
157.42 KB
Malaria
Disease ontology for Malaria.
DENGUE_IDODEN1.0_2014-08.obo.gz
129.86 KB
Dengue
Disease ontology for Dengue fever.
GENE-TREES-NEWICK_2019-08.tar.gz
6.38 MB
Gene trees
Gene trees in Newick (a.k.a. New Hampshire) format.
GENE-TREES-PEPTIDES_2019-08.tar.gz
167.16 MB
Gene trees
Gene trees in PhyloXML format, containing peptide alignments.
GENE-TREES-TRANSCRIPTS_2019-08.tar.gz
321.69 MB
Gene trees
Gene trees in PhyloXML format, containing transcript alignments.
GENE-ALIGN-PEPTIDES_2019-08.tar.gz
169.37 MB
Gene alignments
Alignments of peptide sequences, used to infer gene trees.
GENE-ALIGN-TRANSCRIPTS_2019-08.tar.gz
343.56 MB
Gene alignments
Alignments of transcript sequences, used to infer gene trees.
HOMOLOGS_2019-08.tar.gz
291.88 MB
Homologs
Homologs in OrthoXML format.
WG-ALIGN_2019-08_Anopheles-albimanus-AalbS2_Anopheles-funestus-AfunF3_lastz.tar.gz
23.92 MB
Whole genome alignments
Pairwise whole genome alignment between Anopheles albimanus (AalbS2) and Anopheles funestus (AfunF3), in MAF format.
WG-ALIGN_2019-08_Anopheles-gambiae-AgamP4_Anopheles-funestus-AfunF3_lastz.tar.gz
89.58 MB
Whole genome alignments
Pairwise whole genome alignment between Anopheles gambiae (AgamP4) and Anopheles funestus (AfunF3), in MAF format.
WG-ALIGN_2019-06_Anopheles-albimanus-AalbS2_Anopheles-funestus-AfunF3_lastz.tar.gz
23.92 MB
Whole genome alignments
Pairwise whole genome alignment between Anopheles albimanus (AalbS2) and Anopheles funestus (AfunF3), in MAF format.
WG-ALIGN_2019-06_Anopheles-gambiae-AgamP4_Anopheles-funestus-AfunF3_lastz.tar.gz
89.6 MB
Whole genome alignments
Pairwise whole genome alignment between Anopheles gambiae (AgamP4) and Anopheles funestus (AfunF3), in MAF format.
WG-ALIGN_2018-06_Anopheles-gambiae-AgamP4_Anopheles-atroparvus-AatrE3_lastz.tar.gz
46.09 MB
Whole genome alignments
Pairwise whole genome alignment between Anopheles gambiae (AgamP4) and Anopheles atroparvus (AatrE3), in MAF format.
WG-ALIGN_2018-04_Aedes-aegypti-lvpagwg-AaegL5_Aedes-albopictus-AaloF1_lastz.tar.gz
120.61 MB
Whole genome alignments
Pairwise whole genome alignment between () and (), in MAF format.
WG-ALIGN_2018-02_Aedes-aegypti-lvpagwg-AaegL5_Anopheles-gambiae-AgamP4_lastz.tar.gz
15.44 MB
Whole genome alignments
Pairwise whole genome alignment between () and (), in MAF format.
WG-ALIGN_2018-02_Aedes-aegypti-lvpagwg-AaegL5_Culex-quinquefasciatus-CpipJ2_lastz.tar.gz
29.97 MB
Whole genome alignments
Pairwise whole genome alignment between () and (), in MAF format.