Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 626 - 650 of 718
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File Organism Size Type Description
Anopheles-quadriannulatus-AquaS1_superscaffolded.tar.gz 63.93 MB Other Superscaffolded assembly data for Anopheles-quadriannulatus-AquaS1 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome...
Anopheles-sinensis-AsinC2_superscaffolded.tar.gz 65.95 MB Other Superscaffolded assembly data for Anopheles-sinensis-AsinC2 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies...
Anopheles-sinensis-AsinS2_superscaffolded.tar.gz 61.38 MB Other Superscaffolded assembly data for Anopheles-sinensis-AsinS2 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies...
Anopheles-stephensi-AsteI2_superscaffolded.tar.gz 64.7 MB Other Superscaffolded assembly data for Anopheles-stephensi-Astel2 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies...
Anopheles-stephensi-AsteS1_superscaffolded.tar.gz 60.65 MB Other Superscaffolded assembly data for Anopheles-stephensi-AsteS1 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies...
Anopheles-merus-AmerM2_superscaffolded.tar.gz 68.2 MB Other Superscaffolded assembly data for Anopheles-merus-AmerM2 derived from the paper "Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies",...
PopBio-Map-Data-Dictionary-2019-09.pdf 77.94 KB Other There are 5 specialized views in PopBio Map to reflect the major kinds of data contained within our database. Each data type will have different associated fields, although some...
ANATOMY_TGMA1.12_2013-06.obo.gz 133.59 KB Anatomy Mosquito anatomy ontology.
ANATOMY_TADS1.22_2013-04.obo.gz 45.28 KB Anatomy Tick Gross Anatomy.
MALARIA_IDOMAL1.3.9_2015-03.obo.gz 157.42 KB Malaria Disease ontology for Malaria.
DENGUE_IDODEN1.0_2014-08.obo.gz 129.86 KB Dengue Disease ontology for Dengue fever.
GENE-TREES-NEWICK_2019-08.tar.gz 6.38 MB Gene trees Gene trees in Newick (a.k.a. New Hampshire) format.
GENE-TREES-PEPTIDES_2019-08.tar.gz 167.16 MB Gene trees Gene trees in PhyloXML format, containing peptide alignments.
GENE-TREES-TRANSCRIPTS_2019-08.tar.gz 321.69 MB Gene trees Gene trees in PhyloXML format, containing transcript alignments.
GENE-ALIGN-PEPTIDES_2019-08.tar.gz 169.37 MB Gene alignments Alignments of peptide sequences, used to infer gene trees.
GENE-ALIGN-TRANSCRIPTS_2019-08.tar.gz 343.56 MB Gene alignments Alignments of transcript sequences, used to infer gene trees.
HOMOLOGS_2019-08.tar.gz 291.88 MB Homologs Homologs in OrthoXML format.
WG-ALIGN_2019-08_Anopheles-albimanus-AalbS2_Anopheles-funestus-AfunF3_lastz.tar.gz 23.92 MB Whole genome alignments Pairwise whole genome alignment between Anopheles albimanus (AalbS2) and Anopheles funestus (AfunF3), in MAF format.
WG-ALIGN_2019-08_Anopheles-gambiae-AgamP4_Anopheles-funestus-AfunF3_lastz.tar.gz 89.58 MB Whole genome alignments Pairwise whole genome alignment between Anopheles gambiae (AgamP4) and Anopheles funestus (AfunF3), in MAF format.
WG-ALIGN_2019-06_Anopheles-albimanus-AalbS2_Anopheles-funestus-AfunF3_lastz.tar.gz 23.92 MB Whole genome alignments Pairwise whole genome alignment between Anopheles albimanus (AalbS2) and Anopheles funestus (AfunF3), in MAF format.
WG-ALIGN_2019-06_Anopheles-gambiae-AgamP4_Anopheles-funestus-AfunF3_lastz.tar.gz 89.6 MB Whole genome alignments Pairwise whole genome alignment between Anopheles gambiae (AgamP4) and Anopheles funestus (AfunF3), in MAF format.
WG-ALIGN_2018-06_Anopheles-gambiae-AgamP4_Anopheles-atroparvus-AatrE3_lastz.tar.gz 46.09 MB Whole genome alignments Pairwise whole genome alignment between Anopheles gambiae (AgamP4) and Anopheles atroparvus (AatrE3), in MAF format.
WG-ALIGN_2018-04_Aedes-aegypti-lvpagwg-AaegL5_Aedes-albopictus-AaloF1_lastz.tar.gz 120.61 MB Whole genome alignments Pairwise whole genome alignment between () and (), in MAF format.
WG-ALIGN_2018-02_Aedes-aegypti-lvpagwg-AaegL5_Anopheles-gambiae-AgamP4_lastz.tar.gz 15.44 MB Whole genome alignments Pairwise whole genome alignment between () and (), in MAF format.
WG-ALIGN_2018-02_Aedes-aegypti-lvpagwg-AaegL5_Culex-quinquefasciatus-CpipJ2_lastz.tar.gz 29.97 MB Whole genome alignments Pairwise whole genome alignment between () and (), in MAF format.

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