Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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File Organism Size Type Description
Anopheles-atroparvus-EBRO_BASEFEATURES_AatrE3.1.gff3.gz Anopheles atroparvus 2.12 MB Basefeatures EBRO strain AatrE3.1 geneset in GFF3 format.
Anopheles-atroparvus-EBRO_BASEFEATURES_AatrE3.1.gtf.gz Anopheles atroparvus 1.8 MB Basefeatures EBRO strain AatrE3.1 geneset in GTF (v2.2) format.
Anopheles-atroparvus-EBRO_SCAFFOLD2CHROMOSOME_AatrE3.agp.gz Anopheles atroparvus 219.01 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles atroparvus EBRO strain, AatrE3 assembly.
Anopheles-atroparvus-EBRO_MAPPINGS_AatrE1.3-AatrE1.4.txt Anopheles atroparvus 10.66 KB ID Mapping Stable ID mapping between genesets AatrE1.3 and AatrE1.4 (RNA gene update)
Anopheles-atroparvus-EBRO_REPEATS.lib Anopheles atroparvus 28.31 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles atroparvus, EBRO strain.
Anopheles-atroparvus-EBRO_REPEATFEATURES_AatrE3.gff3.gz Anopheles atroparvus 3.58 MB Repeat features EBRO strain AatrE3 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-christyi-ACHKN1017_CONTIGS_AchrA1.fa.gz Anopheles christyi 52.51 MB Contigs ACHKN1017 strain genomic contig sequences, AchrA1 assembly.
Anopheles-christyi-ACHKN1017_SCAFFOLDS_AchrA1.fa.gz Anopheles christyi 52.55 MB Scaffolds ACHKN1017 strain genomic scaffold sequences, AchrA1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-christyi-ACHKN1017_PEPTIDES_AchrA1.7.fa.gz Anopheles christyi 3.78 MB Peptides ACHKN1017 strain peptide sequences, AchrA1.7 geneset.
Anopheles-christyi-ACHKN1017_TRANSCRIPTS_AchrA1.7.fa.gz Anopheles christyi 5.95 MB Transcripts ACHKN1017 strain transcript sequences, AchrA1.7 geneset.
Anopheles-christyi-ACHKN1017_BASEFEATURES_AchrA1.7.gff3.gz Anopheles christyi 2.13 MB Basefeatures ACHKN1017 strain AchrA1.7 geneset in GFF3 format.
Anopheles-christyi-ACHKN1017_BASEFEATURES_AchrA1.7.gtf.gz Anopheles christyi 1.28 MB Basefeatures ACHKN1017 strain AchrA1.7 geneset in GTF (v2.2) format.
Anopheles-christyi-ACHKN1017_CONTIG2SCAFFOLD_AchrA1.agp.gz Anopheles christyi 284.78 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles christyi ACHKN1017, AchrA1 assembly.
Anopheles-christyi-ACHKN1017_MAPPINGS_AchrA1.3-AchrA1.4.txt Anopheles christyi 6.34 KB ID Mapping Stable ID mapping between genesets AchrA1.3 and AchrA1.4 (RNA gene update)
Anopheles-christyi-ACHKN1017_REPEATS.lib Anopheles christyi 189.72 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles christyi, ACHKN1017 strain.
Anopheles-christyi-ACHKN1017_REPEATFEATURES_AchrA1.gff3.gz Anopheles christyi 3.81 MB Repeat features ACHKN1017 strain AchrA1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-coluzzii_MSM-STATS_VB-2018-10.txt.gz Anopheles coluzzii 4.96 MB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Anopheles-coluzzii-Mali-NIH_CONTIGS_AcolM1.fa.gz Anopheles coluzzii 62.26 MB Contigs Mali-NIH strain genomic contigs sequences, AcolM1 assembly.
Anopheles-coluzzii-Mali-NIH_SCAFFOLDS_AcolM1.fa.gz Anopheles coluzzii 65.08 MB Scaffolds Mali-NIH strain genomic scaffold sequences, AcolM1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-coluzzii-Mali-NIH_PEPTIDES_AcolM1.7.fa.gz Anopheles coluzzii 4.28 MB Peptides Mali-NIH strain peptide sequences, AcolM1.7 geneset.
Anopheles-coluzzii-Mali-NIH_TRANSCRIPTS_AcolM1.7.fa.gz Anopheles coluzzii 8.79 MB Transcripts Mali-NIH strain transcript sequences, AcolM1.7 geneset.
Anopheles-coluzzii-Mali-NIH_BASEFEATURES_AcolM1.7.gff3.gz Anopheles coluzzii 2.19 MB Basefeatures Mali-NIH strain AcolM1.7 geneset in GFF3 format.
Anopheles-coluzzii-Mali-NIH_BASEFEATURES_AcolM1.7.gtf.gz Anopheles coluzzii 1.76 MB Basefeatures Mali-NIH strain AcolM1.7 geneset in GTF (v2.2) format.
Anopheles-coluzzii-Mali-NIH_BAC-ENDS_Dec12.fa.gz Anopheles coluzzii 45.63 MB BAC ends Mali-NIH strain BAC end sequences from the NCBI trace archive as of December 2012.
Anopheles-coluzzii-Mali-NIH_CONTIG2SCAFFOLD_AcolM1.agp.gz Anopheles coluzzii 544.12 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles coluzzii Mali-NIH strain, AcolM1.2 assembly.

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