Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 151 - 175 of 662
Operations
File Organism Size Type Description
Anopheles-farauti-FAR1_BASEFEATURES_AfarF2.4.gff3.gz Anopheles farauti 2.05 MB Basefeatures FAR1 strain AfarF2.4 geneset in GFF3 format.
Anopheles-farauti-FAR1_BASEFEATURES_AfarF2.4.gtf.gz Anopheles farauti 1.75 MB Basefeatures FAR1 strain AfarF2.4 geneset in GTF (v2.2) format.
Anopheles-farauti-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles farauti 2.09 MB Assembled transcriptome 45708 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-farauti-FAR1_CONTIG2SCAFFOLD_AfarF2.agp.gz Anopheles farauti 76.72 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles farauti FAR1 strain, AfarF2.1 assembly.
Anopheles-farauti-FAR1_MAPPINGS_AfarF2.1-AfarF2.2.txt Anopheles farauti 10.73 KB ID Mapping Stable ID mapping between genesets AfarF2.1 and AfarF2.2 (RNA gene update)
Anopheles-farauti-FAR1_REPEATS.lib Anopheles farauti 18.12 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles farauti, FAR1 strain.
Anopheles-farauti-FAR1_REPEATFEATURES_AfarF2.gff3.gz Anopheles farauti 3.23 MB Repeat features FAR1 strain AfarF2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_farauti_unresolved_transcripts_2015_06.txt Anopheles farauti 1.29 KB Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
anopheles_farauti_projected_cdna_2015_06.fa Anopheles farauti 27.58 MB Transcript projection cDNA sequence (from the old assembly) of projected transcripts.
anopheles_farauti_projected_cds_2015_06.fa Anopheles farauti 20.69 MB Transcript projection Coding sequence (from the old assembly) of projected transcripts.
anopheles_farauti_projected_2015_06.gff3 Anopheles farauti 10.12 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_farauti_projected_pep_2015_06.fa Anopheles farauti 7.1 MB Transcript projection Peptide sequence (from the old assembly) of projected transcripts.
anopheles_farauti_README_2015_06.txt Anopheles farauti 7.38 KB Transcript projection In VectorBase release 1506, Anopheles farauti genes were projected from assembly version 1 (GCA_000473445.1) to assembly version 2 (GCA_000473445.2). This README file describes...
anopheles_farauti_report_2015_06.txt Anopheles farauti 2.18 MB Transcript projection Description of the fate of every transcript in the old assembly, along with statistics to judge the quality and quantity of evidence. Columns: * transcript: stable ID * status:...
anopheles_farauti_summary_2015_06.txt Anopheles farauti 472 bytes Transcript projection A summary of the number of transcripts that could and could not be projected.
anopheles_farauti_unprojected_cdna_2015_06.fa Anopheles farauti 367.59 KB Transcript projection cDNA sequence (from the old assembly) of unprojected transcripts.
anopheles_farauti_unprojected_cds_2015_06.fa Anopheles farauti 314.42 KB Transcript projection Coding sequence (from the old assembly) of unprojected transcripts.
anopheles_farauti_unprojected_2015_06.gff3 Anopheles farauti 161.21 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_farauti_unprojected_pep_2015_06.fa Anopheles farauti 111.11 KB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Anopheles-freeborni-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles freeborni 3.31 MB Assembled transcriptome 74948 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-funestus_MSM-STATS_VB-2018-04.txt.gz Anopheles funestus 222.89 KB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Anopheles-funestus-FUMOZ_CONTIGS_AfunF1.fa.gz Anopheles funestus 57.63 MB Contigs FUMOZ strain genomic contig sequences, AfunF1 assembly.
Anopheles-funestus-FUMOZ_SCAFFOLDS_AfunF1.fa.gz Anopheles funestus 57.93 MB Scaffolds FUMOZ strain genomic scaffold sequences, AfunF1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-funestus-FUMOZ_PEPTIDES_AfunF1.8.fa.gz Anopheles funestus 4.5 MB Peptides FUMOZ strain peptide sequences, AfunF1.8 geneset.
Anopheles-funestus-FUMOZ_TRANSCRIPTS_AfunF1.8.fa.gz Anopheles funestus 8.46 MB Transcripts FUMOZ strain transcript sequences, AfunF1.8 geneset.

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