Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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Operations
File Organism Size Type Description
anopheles_farauti_unprojected_pep_2015_06.fa Anopheles farauti 111.11 KB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Anopheles-freeborni-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles freeborni 3.31 MB Assembled transcriptome 74948 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-funestus-FUMOZ_CHROMOSOMES_AfunF3.fa.gz Anopheles funestus 62.21 MB Chromosomes FUMOZ strain genomic chromosomes sequences, AfunF3 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-funestus-FUMOZ_PEPTIDES_AfunF3.1.fa.gz Anopheles funestus 4.72 MB Peptides FUMOZ strain peptide sequences, AfunF3.1 geneset.
Anopheles-funestus-FUMOZ_TRANSCRIPTS_AfunF3.1.fa.gz Anopheles funestus 11.96 MB Transcripts FUMOZ strain transcript sequences, AfunF3.1 geneset.
Anopheles-funestus-FUMOZ_BASEFEATURES_AfunF3.1.gff3.gz Anopheles funestus 2.33 MB Basefeatures FUMOZ strain AfunF3.1 geneset in GFF3 format.
Anopheles-funestus-FUMOZ_BASEFEATURES_AfunF3.1.gtf.gz Anopheles funestus 2.07 MB Basefeatures FUMOZ strain AfunF3.1 geneset in GTF (v2.2) format.
Anopheles-funestus-Crawford_TRANSCRIPTOME_1.0.fa.gz Anopheles funestus 5.79 MB Assembled transcriptome 15527 assembled RNAseq transcripts generated by Crawford et al. (2010)
Anopheles-funestus-FUMOZ_SCAFFOLD2CHROMOSOME_AfunF3.agp.gz Anopheles funestus 127 bytes Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles funestus FUMOZ strain, AfunF3 assembly.
Anopheles-funestus-FUMOZ_REPEATS.lib Anopheles funestus 161.21 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles funestus, FUMOZ strain.
Anopheles-funestus-FUMOZ_NONREFREPEATFEATURES_AfunF3.gff3.gz Anopheles funestus 8.71 MB Repeat features FUMOZ strain AfunF3 repeat features (RepeatMasker, Dust, TRF) for non_ref_scaffolds in GFF3 format.
Anopheles-funestus-FUMOZ_REPEATFEATURES_AfunF3.gff3.gz Anopheles funestus 6.37 MB Repeat features FUMOZ strain AfunF3 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-funestus_EXPR-STATS_VB-2019-06.txt.gz Anopheles funestus 299.09 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-funestus-FUMOZ_NONREFSCAFFOLDS_AfunF3.fa.gz Anopheles funestus 64.51 MB FUMOZ strain genomic nonrefscaffolds sequences, AfunF3 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-PEST_CHROMOSOMES_AgamP4.fa.gz Anopheles gambiae 76.01 MB Chromosomes PEST strain chromosome arm sequences, AgamP4 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-Pimperena_CONTIGS_AgamS1.fa.gz Anopheles gambiae 70.35 MB Contigs Pimperena strain genomic contigs sequences, AgamS1 assembly.
Anopheles-gambiae-Pimperena_SCAFFOLDS_AgamS1.fa.gz Anopheles gambiae 69.82 MB Scaffolds Pimperena strain genomic scaffolds sequences, AgamS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-PEST_SCAFFOLDS_AgamP4.fa.gz Anopheles gambiae 78.81 MB Scaffolds PEST strain genomic scaffold sequences, AgamP4 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-Pimperena_Y-sequences_2016.fa.gz Anopheles gambiae 52.26 MB Reads Error-correct PacBio reads generated from Anopheles gambiae Pimperena males predicted to be Y-linked by the chromosome quotient (CQ) method. Also known as Ydb from Hall et al.
Anopheles-gambiae-Pimperena_TRACE_2007-05.fa.gz Anopheles gambiae 790.34 MB Reads Pimperena strain submitted trace reads as of May 2007.
Anopheles-gambiae-PEST_PEPTIDES_AgamP4.12.fa.gz Anopheles gambiae 4.73 MB Peptides PEST strain peptide sequences, AgamP4.12 geneset.
Anopheles-gambiae-PEST_TRANSCRIPTS_AgamP4.12.fa.gz Anopheles gambiae 10.88 MB Transcripts PEST strain transcript sequences, AgamP4.12 geneset.
Anopheles-gambiae-PEST_BASEFEATURES_AgamP4.12.gff3.gz Anopheles gambiae 2.57 MB Basefeatures PEST strain AgamP4.12 geneset in GFF3 format.
Anopheles-gambiae-PEST_BASEFEATURES_AgamP4.12.gtf.gz Anopheles gambiae 1.97 MB Basefeatures PEST strain AgamP4.12 geneset in GTF (v2.2) format.
Anopheles-gambiae_EST-CLIPPED_2012-12.fa.gz Anopheles gambiae 45.23 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.

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