Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 176 - 200 of 669
Double-click species to show assemblies
Operations
File Organism Size Type Description
Anopheles-funestus-FUMOZ_CONTIGS_AfunF1.fa.gz Anopheles funestus 57.63 MB Contigs FUMOZ strain genomic contig sequences, AfunF1 assembly.
Anopheles-funestus-FUMOZ_SCAFFOLDS_AfunF1.fa.gz Anopheles funestus 57.93 MB Scaffolds FUMOZ strain genomic scaffold sequences, AfunF1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-funestus-FUMOZ_PEPTIDES_AfunF1.9.fa.gz Anopheles funestus 4.5 MB Peptides FUMOZ strain peptide sequences, AfunF1.9 geneset.
Anopheles-funestus-FUMOZ_TRANSCRIPTS_AfunF1.9.fa.gz Anopheles funestus 8.48 MB Transcripts FUMOZ strain transcript sequences, AfunF1.9 geneset.
Anopheles-funestus-FUMOZ_BASEFEATURES_AfunF1.9.gff3.gz Anopheles funestus 1.99 MB Basefeatures FUMOZ strain AfunF1.9 geneset in GFF3 format.
Anopheles-funestus-FUMOZ_BASEFEATURES_AfunF1.9.gtf.gz Anopheles funestus 1.68 MB Basefeatures FUMOZ strain AfunF1.9 geneset in GTF (v2.2) format.
Anopheles-funestus-Crawford_TRANSCRIPTOME_1.0.fa.gz Anopheles funestus 5.79 MB Assembled transcriptome 15527 assembled RNAseq transcripts generated by Crawford et al. (2010)
Anopheles-funestus-FUMOZ_CONTIG2SCAFFOLD_AfunF1.agp.gz Anopheles funestus 238.95 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles funestus FUMOZ strain, AfunF1 assembly.
Anopheles-funestus-FUMOZ_MAPPINGS_AfunF1.4-AfunF1.5.txt Anopheles funestus 7.56 KB ID Mapping Stable ID mapping between genesets AfunF1.4 and AfunF1.5 (RNA gene update)
Anopheles-funestus-FUMOZ_REPEATS.lib Anopheles funestus 161.21 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles funestus, FUMOZ strain.
Anopheles-funestus-FUMOZ_REPEATFEATURES_AfunF1.gff3.gz Anopheles funestus 3.36 MB Repeat features FUMOZ strain AfunF1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae_MSM-STATS_VB-2018-10.txt.gz Anopheles gambiae 46.06 MB Median shifted means Tab-delimited, gene-averaged, median-shifted expression values, variances and number of replicates for every gene x condition.
Anopheles-gambiae-PEST_CHROMOSOMES_AgamP4.fa.gz Anopheles gambiae 76.01 MB Chromosomes PEST strain chromosome arm sequences, AgamP4 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-Pimperena_CONTIGS_AgamS1.fa.gz Anopheles gambiae 70.35 MB Contigs Pimperena strain genomic contigs sequences, AgamS1 assembly.
Anopheles-gambiae-Pimperena_SCAFFOLDS_AgamS1.fa.gz Anopheles gambiae 69.82 MB Scaffolds Pimperena strain genomic scaffolds sequences, AgamS1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-PEST_SCAFFOLDS_AgamP4.fa.gz Anopheles gambiae 78.81 MB Scaffolds PEST strain genomic scaffold sequences, AgamP4 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-gambiae-Pimperena_Y-sequences_2016.fa.gz Anopheles gambiae 52.26 MB Reads Error-correct PacBio reads generated from Anopheles gambiae Pimperena males predicted to be Y-linked by the chromosome quotient (CQ) method. Also known as Ydb from Hall et al.
Anopheles-gambiae-Pimperena_TRACE_2007-05.fa.gz Anopheles gambiae 790.34 MB Reads Pimperena strain submitted trace reads as of May 2007.
Anopheles-gambiae-PEST_PEPTIDES_AgamP4.10.fa.gz Anopheles gambiae 4.58 MB Peptides PEST strain peptide sequences, AgamP4.10 geneset.
Anopheles-gambiae-PEST_TRANSCRIPTS_AgamP4.10.fa.gz Anopheles gambiae 8.46 MB Transcripts PEST strain transcript sequences, AgamP4.10 geneset.
Anopheles-gambiae-PEST_BASEFEATURES_AgamP4.10.gff3.gz Anopheles gambiae 2.49 MB Basefeatures PEST strain AgamP4.10 geneset in GFF3 format.
Anopheles-gambiae-PEST_BASEFEATURES_AgamP4.10.gtf.gz Anopheles gambiae 1.84 MB Basefeatures PEST strain AgamP4.10 geneset in GTF (v2.2) format.
Anopheles-gambiae_EST-CLIPPED_2012-12.fa.gz Anopheles gambiae 45.23 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Anopheles-gambiae_EST-RAW_2012-12.fa.gz Anopheles gambiae 45.32 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Anopheles-gambiae-Pimperena_BAC-ENDS_2012-12.fa.gz Anopheles gambiae 22.79 MB BAC ends Pimperena strain BAC end sequences from the NCBI trace archive as of December 2012.

Pages