Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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File Organism Size Type Description
Anopheles-melas-CM1001059_A_BASEFEATURES_AmelC2.6.gff3.gz Anopheles melas 2.44 MB Basefeatures CM1001059_A strain AmelC2.6 geneset in GFF3 format.
Anopheles-melas-CM1001059_A_BASEFEATURES_AmelC2.6.gtf.gz Anopheles melas 1.67 MB Basefeatures CM1001059_A strain AmelC2.6 geneset in GTF (v2.2) format.
Anopheles-melas-CM1001059_A_CONTIG2SCAFFOLD_AmelC2.agp.gz Anopheles melas 439.33 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles melas CM1001059_A strain, AmelC2.1 assembly.
Anopheles-melas-CM1001059_A_MAPPINGS_AmelC2.2-AmelC2.3.txt Anopheles melas 8.6 KB ID Mapping Stable ID mapping between genesets AmelC2.2 and AmelC2.3 (RNA gene update)
Anopheles-melas-CM1001059_A_REPEATS.lib Anopheles melas 10.22 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles melas, CM1001059_A strain.
Anopheles-melas-CM1001059_A_REPEATFEATURES_AmelC2.gff3.gz Anopheles melas 5.02 MB Repeat features CM1001059_A strain AmelC2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_melas_unresolved_transcripts_2015_06.txt Anopheles melas 238 bytes Transcript projection The stable IDs of unprojected transcripts which fulfill the following criteria, and thus represented credible genes on the old assembly: * protein_features > 0 * orthologs...
anopheles_melas_projected_cdna_2015_06.fa Anopheles melas 20.99 MB Transcript projection cDNA sequence (from the old assembly) of projected transcripts.
anopheles_melas_projected_cds_2015_06.fa Anopheles melas 20.9 MB Transcript projection Coding sequence (from the old assembly) of projected transcripts.
anopheles_melas_projected_2015_06.gff3 Anopheles melas 9.95 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_melas_projected_pep_2015_06.fa Anopheles melas 7.21 MB Transcript projection Peptide sequence (from the old assembly) of projected transcripts.
anopheles_melas_README_2015_06.txt Anopheles melas 7.38 KB Transcript projection In VectorBase release 1506, Anopheles melas genes were projected from assembly version 1 (GCA_000473525.1) to assembly version 2 (GCA_000473525.2). This README file describes the...
anopheles_melas_report_2015_06.txt Anopheles melas 2.87 MB Transcript projection Description of the fate of every transcript in the old assembly, along with statistics to judge the quality and quantity of evidence. Columns: * transcript: stable ID * status:...
anopheles_melas_summary_2015_06.txt Anopheles melas 472 bytes Transcript projection A summary of the number of transcripts that could and could not be projected.
anopheles_melas_unprojected_cdna_2015_06.fa Anopheles melas 1.75 MB Transcript projection cDNA sequence (from the old assembly) of unprojected transcripts.
anopheles_melas_unprojected_cds_2015_06.fa Anopheles melas 1.75 MB Transcript projection Coding sequence (from the old assembly) of unprojected transcripts.
anopheles_melas_unprojected_2015_06.gff3 Anopheles melas 144.51 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_melas_unprojected_pep_2015_06.fa Anopheles melas 613.12 KB Transcript projection Peptide sequence (from the old assembly) of unprojected transcripts.
Anopheles-merus-MAF_CONTIGS_AmerM2.fa.gz Anopheles merus 64.91 MB Contigs MAF strain genomic contig sequences, AmerM2 assembly.
Anopheles-merus-MAF_SCAFFOLDS_AmerM2.fa.gz Anopheles merus 65.98 MB Scaffolds MAF strain genomic scaffold sequences, AmerM2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-merus-MAF_PEPTIDES_AmerM2.9.fa.gz Anopheles merus 4.37 MB Peptides MAF strain peptide sequences, AmerM2.9 geneset.
Anopheles-merus-MAF_TRANSCRIPTS_AmerM2.9.fa.gz Anopheles merus 8.61 MB Transcripts MAF strain transcript sequences, AmerM2.9 geneset.
Anopheles-merus-MAF_BASEFEATURES_AmerM2.9.gff3.gz Anopheles merus 2.08 MB Basefeatures MAF strain AmerM2.9 geneset in GFF3 format.
Anopheles-merus-MAF_BASEFEATURES_AmerM2.9.gtf.gz Anopheles merus 1.72 MB Basefeatures MAF strain AmerM2.9 geneset in GTF (v2.2) format.
Anopheles-merus-MAF_CONTIG2SCAFFOLD_AmerM2.agp.gz Anopheles merus 319.99 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles merus MAF1 strain, AmerM2.1 assembly.

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