Bioinformatics Resource for Invertebrate Vectors of Human Pathogens
All Microarrays and Genesets
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MMC1 is a spotted cDNA microarray. It includes a total of 18,760 sequenced Anopheles EST clones prepared from two immune competent cell lines (Dimopoulos et al., 2000; Dimopoulos et al., 2001) and pooled mosquito developmental stages and adult mosquito heads (G. K. Christophides, unpublished). ArrayExpress: A-MEXP-225

The Anopheles 4K DNA microarray platform contains 3,840 EST clones prepared from two immune competent cell lines (Dimopoulos et al., 2000; Dimopoulos et al., 2001). All 4K ESTs are also spotted on the MMC1 array. The v1.0 and v2.0 arrays differ only in the spotting order. ArrayExpress: A-MEXP-226

The Anopheles 4K DNA microarray platform contains 3,840 EST clones prepared from two immune competent cell lines (Dimopoulos et al., 2000; Dimopoulos et al., 2001). All 4K ESTs are also spotted on the MMC1 array. The v1.0 and v2.0 arrays differ only in the spotting order. ArrayExpress: A-MEXP-227

Clones obtained from EST project of midgut and Malpighian tubules of adult female unfed adult and fourth instar larvae Aedes aegypti. ArrayExpress: A-MEXP-229

experiments:
 

The MMC2 microarray is a spotted PCR amplicon array. The amplicons are 150-500 bp long and mostly represent single exons located preferably close to the 3' ends of coding sequences of 12,500 predicted genes in the A. gambiae genome.

A microarray containing fragments of 254 Anopheles gambiae genes from families associated with metabolic-based insecticide resistance was constructed. These gene fragments included 103 cytochrome P450s, 31 esterases, 35 glutathione S-transferases, 47 red/ox genes, 5 ATP-binding cassette transporters, tissue specific genes and housekeeping genes. Each gene represented on the microarray was either obtained by PCR amplification or artificially synthesized as a 70-mer oligo. ArrayExpress: A-MEXP-862

experiments:
 

A total of 9,600 total features were printed. Out of these features, 9,504 were cDNA clones from Aedes aegypti and 96 were buffer blanks. ArrayExpress: A-MEXP-940

A spotted oligo array containing fragments of 235 members of the cytochrome P450, glutathione transferase and carboxy/cholinesterase families in Aedes aegypti. ArrayExpress: A-MEXP-623

A microarray containing fragments of 230 Anopheles gambiae genes from families associated with metabolic-based insecticide resistance was constructed. These gene fragments included 103 cytochrome P450s, 31 esterases, 35 GSTs, 41 Red/Ox genes, 5 ABC transporters, tissue specific genes and housekeeping genes. Each gene represented on the microarray was either obtained by PCR amplification or artificially synthesized as a 70-mer antisense oligo. ArrayExpress: A-MEXP-137

A microarray containing fragments of 254 Anopheles gambiae genes from families associated with metabolic-based insecticide resistance was constructed. These gene fragments included 103 cytochrome P450s, 31 esterases, 35 glutathione S-transferases, 47 red/ox genes, 5 ATP-binding cassette transporters, tissue specific genes and housekeeping genes. Each gene represented on the microarray was either obtained by PCR amplification or artificially synthesized as a 70-mer oligo. ArrayExpress: A-MEXP-863

A spotted oligo array containing fragments of 312 members of the cytochrome P450, glutathione transferase and carboxy/cholinesterase families in Aedes aegypti.

This is an Agilent array featuring 60mer oligos designed against the AgamP3.4 transcript set, some manually annotated genes and immunity genes.

experiments:
 

60-mer oligomers designed for 1928 EST clusters generated for immune-response activated hemocytes from adult Ae. aegypti females by the Bruce Christensen Laboratory, University of Wisconsin-Madison. The arrays have 4 features per reporter. GEO: GPL2994

60-mer oligomers designed for 1928 EST clusters generated for immune-response activated hemocytes from adult Ae. aegypti females by the Bruce Christensen Laboratory, University of Wisconsin-Madison. The arrays have 4 features per reporter. Print variant of v1. GEO: GPL2982

Commercially available Anopheles gambiae array from Agilent. 43,803 60-mer probes sourced from RefSeq, UniGene, TIGR, Ensembl, Entrez gene, anoGarn1 and UCSC dm3. GEO: GPL13157

experiments:
 

Custom-commercial Aedes aegypti array from Agilent, containing 45220 60-mer probes, designed against the AaegL1.1 set of 16k transcripts. GEO: GPL8972

Custom-commercial Anopheles gambiae array from Agilent, containing 60-mer probes designed against 13k transcripts from the AgamP3.4 gene build. GEO: GPL9246

Custom-commercial Aedes aegypti array from Agilent, containing 45220 60-mer probes, designed against the AaegL1.1 set of 16k transcripts at the University of California, Irvine. GEO: GPL10542

This oligo DNA array was designed at the National Institute of Infectious Diseases, Japan, for 62 different cDNA segments encoding unique P450 isoforms of the Culex pipiens complex. Other probes for non-P450 Culex pipiens complex genes were also designed. The array uses Agilent's flexible SurePrint in situ synthesis. GEO: GPL8743.

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