Genome sequence


This page shows the genome sequence for a gene of interest. Flanking sequence and introns are displayed. Exons belonging to the gene of interest are shown in red letters with red highlighting. Other exons within this region that do not belong to the gene of interest are shown in black letters with red highlights. Note that coding and non-coding transcripts contribute to this view.

Change the display and highlight features in the gene structure using the Configure this page options as follows:

  • Flanking sequence Select the extent of the flanking regions upstream/downstream of the gene (default is 600 bps).
  • Number of base pairs per row Change the number of base pairs displayed in each row.
  • Additional exons to display Exons from VectorBase (core exons), ab initio or EST gene exons (gene models based on EST evidence, EST genes) can be highlighted.
  • Orientation of additional exons Exons on the forward, reverse or both strands can be highlighted.
  • Show variations All variations (with links) or no variations can be shown.
  • Filter variations by population Choose a specific population to view.
  • Minor allele freqeuncy for population filter Demand a cut-off for variation frequency within a population
  • Line numbering Relative to the sequence (starting at the number 1 in the sequence displayed), relative to the coordinate system (genomic coordinates) or no numbering can be selected.