Assembled transcriptome

Short RNAseq reads (and perhaps EST data) assembled into transcripts.

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Eight Anopheline species mRNA sequences

Chris Hittinger and colleagues at University of Colorado Denver Health Sciences Center, Washington University School of Medicine and Vanderbilt University have sequenced the transcriptomes of eight Anopheline species:

  • Anopheles albimanus
  • Anopheles arabiensis
  • Anopheles dirus
  • Anopheles farauti
  • Anopheles freeborni
  • Anopheles quadriannulatus
  • Anopheles quadrimaculatus
  • Anopheles stephensi

The two species in bold still have no reference assembly or genome browser in VectorBase.

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Aedes-albopictus-NIAID_GAPW01.fa.gz

Description: 

TSA:GAPW00000000.1 from reproductive organs

Anopheles-albimanus-white-stripe_TRANSCRIPTOME_Hittinger-1.0.fa.gz

Description: 
31295 assembled RNAseq transcripts generated by Hittinger et al. (2010).

Anopheles-albimanus-white-stripe_TRANSCRIPTOME_Martinez-2.0.fa.gz

Description: 
16699 assembled transcript sequences from combined RNAseq and EST sequencing generated by Martínez-Barnetche et al. (2012)
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Anopheles-aquasalis-NIAID_TSA_GAMD01.fa.gz

Description: 

TSA:GAMD00000000.1 from L3, L4 larvae and adult females.

Anopheles-arabiensis-Hittinger_TRANSCRIPTOME_1.0.fa.gz

Description: 
72049 assembled RNAseq transcripts generated by Hittinger et al. (2010).

Anopheles-dirus-Hittinger_TRANSCRIPTOME_1.0.fa.gz

Description: 
41061 assembled RNAseq transcripts generated by Hittinger et al. (2010).

Anopheles-farauti-Hittinger_TRANSCRIPTOME_1.0.fa.gz

Description: 
45708 assembled RNAseq transcripts generated by Hittinger et al. (2010).

Anopheles-freeborni-Hittinger_TRANSCRIPTOME_1.0.fa.gz

Description: 
74948 assembled RNAseq transcripts generated by Hittinger et al. (2010).

Anopheles-funestus-Crawford_TRANSCRIPTOME_1.0.fa.gz

Description: 
15527 assembled RNAseq transcripts generated by Crawford et al. (2010)

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