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Links to VectorBase's BLAST tool

Release VB-2018-04

We are pleased to announce the April 2018 release of VectorBase (VB-2018-04):
  • Many large (and small) datasets have been added to the Population Biology database, including abundance data from four counties in Florida, additional years of data from Southern Nevada, and entomological monitoring data from Uganda. In total 1.6 million new data records have been added, representing 16 million individual vector specimens.

New whole genome alignment for Aedes spp

New whole genome alignment for Aedes aegypti AaegL5 vs Aedes albopictus, here a sample region in Chromosome 2

New RNAseq differential expression experiments

These four new differential expression datasets have been added:

Four new experiments have been processed and added to the expression browser:

New variation data

New variation data have been added for
  1. Culex quinquefasciatus (two SNPs implicated in insecticide resistance from the paper by Walter Fabricio Silva Martins et al, "Local selection in the presence of high levels of gene flow: Evidence of heterogeneous insecticide selection pressure across Ugandan Culex quinquefasciatus populations", PLOS, Neglected Tropical Diseases doi.org/10.1371/journal.pntd.0005917).

New PopBio data

Forty-one large (and small) datasets have been added to the Population Biology database, including abundance data from four counties in Florida, additional years of data from Southern Nevada, and entomological monitoring data from Uganda. In total 1.6 million new data records have been added, representing 16 million individual vector specimens.

Musca-domestica_MSM-STATS_VB-2018-04.txt.gz

Description: 

Tab-delimited, gene-averaged, median-shifted ex

Culex-quinquefasciatus_MSM-STATS_VB-2018-04.txt.gz

Description: 

Tab-delimited, gene-averaged, median-shifted ex

Cimex-lectularius_MSM-STATS_VB-2018-04.txt.gz

Description: 

Tab-delimited, gene-averaged, median-shifted ex

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