AatrE1

This assembly was generated using 101 bp paired-end Illumina HiSeq2000 reads generated from three libraries: a 180 bp insert ‘fragment’ library, a 1.5 kb ‘jump’ library, and a 38 kb ‘fosill’ library. Sequencing template for the fragment and jump libraries was derived from genomic DNA extracted from a single individual, which was preserved by freezing at -80C. Native genomic DNA was used for the fragment library and whole genome amplified DNA was used for the jump library. Template for the fosill library was generated from a pooled extraction of many individuals. Reads were assembled at the Broad Institute using the ALLPATHS LG algorithm, with the Haploidify option enabled to address high allelic heterozygosity in the template.

Genome Size (bp): 
224,290,125
Scaffold N50 (bp): 
9 206 694
Scaffold count: 
1 371
Release date: 
Wednesday, October 16, 2013
Strain: 

EBRO

Originally isolated from Spain, isofemale selection was performed prior to genome sequencing. For more details click here.

Gene sets

24 Oct 2017
27 Jun 2017
21 Feb 2017
13 Aug 2015
24 Jun 2014

Assembly Specific Downloads

 Downloads for this assembly