AchrA1

This assembly was generated using 101 bp paired-end Illumina HiSeq2000 reads generated from two libraries: a 180 bp insert ‘fragment’ library and a 1.5 kb ‘jump’ library. Sequencing template for the fragment and jump libraries was derived from genomic DNA extracted from a single individual, which was preserved by freezing at -80C. Native genomic DNA was used for the fragment library and whole genome amplified DNA was used for the jump library. Reads were assembled at the Broad Institute using the ALLPATHS LG algorithm, with the Haploidify option enabled to address high allelic heterozygosity in the template.

Genome Size (bp): 
172,658,580
Scaffold N50 (bp): 
9 057
Scaffold count: 
30 369
Release date: 
Tuesday, April 30, 2013
Strain: 

ACHKN1017

Originally isolated from wild individuals collected in Kenya (Kikuyu, 2010), mosquitoes were donated by Laban Njoroge and Charles Mbogo (KEMRI, Kenya), and Samantha O'Loughlin and Austin Burt (Imperial College London). There is no colony.

Gene sets

22 Oct 2018
24 Oct 2017
27 Jun 2017
21 Feb 2017
20 Oct 2015

Assembly Specific Downloads

 Downloads for this assembly