AfunF1

This assembly was generated using 101 bp paired-end Illumina HiSeq2000 reads generated from three libraries: a 180 bp insert ‘fragment’ library, a 1.5 kb ‘jump’ library, and a 38 kb ‘fosill’ library. Sequencing template for the fragment and jump libraries was derived from genomic DNA extracted from a single individual, which was preserved by freezing at -80C. Native genomic DNA was used for the fragment library and whole genome amplified DNA was used for the jump library. Template for the fosill library was generated from a pooled extraction of many individuals. Reads were assembled at the Broad Institute using the ALLPATHS LG algorithm, with the Haploidify option enabled to address high allelic heterozygosity in the template.

Genome Size (bp): 
225,223,604
Scaffold N50 (bp): 
671 960
Scaffold count: 
1 392
Release date: 
Tuesday, April 30, 2013
Strain: 

FUMOZ

Originally isolated in Mozambique. There was no isofemale subcolony selection. For more details click here.

Gene sets

21 Feb 2018
24 Oct 2017
25 Apr 2017
21 Feb 2017
18 Oct 2016

Assembly Specific Downloads

 Downloads for this assembly