Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Leptotrombidium deliense (Leptotrombidium deliense strain UoL-UT)
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Sarcoptes scabiei (Sarcoptes scabiei strain Arlian)
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Ixodes scapularis (Ixodes scapularis strain Wikel)
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Cimex lectularius (Cimex lectularius strain Harlan)
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Rhodnius prolixus (Rhodnius prolixus strain CDC)
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Pediculus humanus (Pediculus humanus corporis strain USDA)
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Stomoxys calcitrans (Stomoxys calcitrans strain USDA)
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Musca domestica (Musca domestica strain aabys)
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Glossina fuscipes fuscipes (Glossina fuscipes fuscipes strain IAEA)
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Glossina palpalis (Glossina palpalis gambiensis strain IAEA)
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Glossina austeni (Glossina austeni strain TTRI)
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Glossina pallidipes (Glossina pallidipes strain IAEA)
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Glossina morsitans (Glossina morsitans morsitans strain Yale)
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Glossina brevipalpis (Glossina brevipalpis strain IAEA)
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Drosophila melanogaster (Drosophila melanogaster)
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Aedes aegypti (LVP_AGWG) (Aedes aegypti strain LVP_AGWG)
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Aedes albopictus (Aedes albopictus strain Foshan)
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Culex quinquefasciatus (Culex quinquefasciatus strain Johannesburg)
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Anopheles atroparvus (Anopheles atroparvus strain EBRO)
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Anopheles sinensis (Anopheles sinensis strain SINENSIS)
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Anopheles darlingi (Anopheles darlingi strain Coari)
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Anopheles albimanus (Anopheles albimanus strain STECLA)
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Anopheles farauti (Anopheles farauti strain FAR1)
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Anopheles dirus (Anopheles dirus strain WRAIR2)
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Anopheles stephensi (Anopheles stephensi strain SDA-500)
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Anopheles maculatus (Anopheles maculatus strain maculatus3)
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Anopheles culicifacies (Anopheles culicifacies strain A-37)
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Anopheles minimus (Anopheles minimus strain MINIMUS1)
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Anopheles funestus (Anopheles funestus strain FUMOZ)
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Anopheles melas (Anopheles melas strain CM1001059_A)
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Anopheles coluzzii (Anopheles coluzzii strain Mali-NIH)
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Anopheles quadriannulatus (Anopheles quadriannulatus strain SANGWE)
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Anopheles gambiae (Anopheles gambiae strain PEST)
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Anopheles merus (Anopheles merus strain MAF)
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Anopheles arabiensis (Anopheles arabiensis strain Dongola)
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Anopheles epiroticus (Anopheles epiroticus strain Epiroticus2)
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Anopheles christyi (Anopheles christyi strain ACHKN1017)
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Phlebotomus papatasi (Phlebotomus papatasi strain Israel)
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Lutzomyia longipalpis (Lutzomyia longipalpis strain Jacobina)
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Biomphalaria glabrata (Biomphalaria glabrata strain BB02)