Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Musca domestica (Musca domestica aabys)
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Stomoxys calcitrans (Stomoxys calcitrans USDA)
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Glossina fuscipes fuscipes (Glossina fuscipes fuscipes IAEA)
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Glossina palpalis (Glossina palpalis gambiensis IAEA)
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Glossina austeni (Glossina austeni TTRI)
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Glossina pallidipes (Glossina pallidipes IAEA)
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Glossina morsitans (Glossina morsitans morsitans Yale)
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Glossina brevipalpis (Glossina brevipalpis IAEA)
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Drosophila melanogaster (Drosophila melanogaster)
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Lutzomyia longipalpis (Lutzomyia longipalpis Jacobina)
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Phlebotomus papatasi (Phlebotomus papatasi Israel)
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Aedes aegypti (LVP_AGWG) (Aedes aegypti LVP_AGWG)
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Aedes albopictus (Aedes albopictus Foshan)
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Culex quinquefasciatus (Culex quinquefasciatus Johannesburg)
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Anopheles albimanus (Anopheles albimanus STECLA)
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Anopheles darlingi (Anopheles darlingi Coari)
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Anopheles atroparvus (Anopheles atroparvus EBRO)
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Anopheles sinensis (Anopheles sinensis SINENSIS)
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Anopheles farauti (Anopheles farauti FAR1)
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Anopheles dirus (Anopheles dirus WRAIR2)
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Anopheles stephensi (Anopheles stephensi SDA-500)
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Anopheles maculatus (Anopheles maculatus maculatus3)
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Anopheles funestus (Anopheles funestus FUMOZ)
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Anopheles culicifacies (Anopheles culicifacies A-37)
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Anopheles minimus (Anopheles minimus MINIMUS1)
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Anopheles merus (Anopheles merus MAF)
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Anopheles arabiensis (Anopheles arabiensis Dongola)
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Anopheles gambiae (Anopheles gambiae PEST)
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Anopheles melas (Anopheles melas CM1001059_A)
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Anopheles quadriannulatus (Anopheles quadriannulatus SANGWE)
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Anopheles coluzzii (Anopheles coluzzii Mali-NIH)
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Anopheles christyi (Anopheles christyi ACHKN1017)
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Anopheles epiroticus (Anopheles epiroticus Epiroticus2)
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Cimex lectularius (Cimex lectularius Harlan)
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Rhodnius prolixus (Rhodnius prolixus CDC)
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Pediculus humanus (Pediculus humanus corporis USDA)
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Sarcoptes scabiei (Sarcoptes scabiei Arlian)
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Ixodes scapularis (Ixodes scapularis Wikel)
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Biomphalaria glabrata (Biomphalaria glabrata BB02)