Release VB-2019-06

We are pleased to announce the June 2019 release of VectorBase (VB-2019-06):

Genomes

Released genomes, with gene predictions

Organism Strain Assembly Gene set Gene Count Browser
Aedes aegypti Liverpool AGWG AaegL5 AaegL5.2 19 763
Aedes albopictus Foshan AaloF1 AaloF1.2 18 294
Anopheles albimanus STECLA AalbS2 AalbS2.6 12 504
Anopheles arabiensis Dongola AaraD1 AaraD1.11 13 685
Anopheles atroparvus EBRO AatrE3 AatrE3.1 14 078
Anopheles christyi ACHKN1017 AchrA1 AchrA1.7 11 185
Anopheles coluzzii Ngousso AcolN1 AcolN1.0 13 299
Anopheles coluzzii Mali-NIH AcolM1 AcolM1.8 14 796
Anopheles culicifacies A A-37 AculA1 AculA1.6 14 727
Anopheles darlingi Coari AdarC3 AdarC3.8 11 002
Anopheles dirus WRAIR2 AdirW1 AdirW1.8 13 251
Anopheles epiroticus Epiroticus2 AepiE1 AepiE1.7 12 286
Anopheles farauti FAR1 AfarF2 AfarF2.6 13 300
Anopheles funestus FUMOZ AfunF3 AfunF3.1 14 176
Anopheles gambiae PEST AgamP4 AgamP4.12 13 796
Anopheles maculatus maculatus3 AmacM1 AmacM1.5 15 018
Anopheles melas CM1001059_A AmelC2 AmelC2.6 15 765
Anopheles merus MAF AmerM2 AmerM2.9 13 605
Anopheles minimus MINIMUS1 AminM1 AminM1.8 13 127
Anopheles quadriannulatus SANGWE AquaS1 AquaS1.11 13 934
Anopheles sinensis China AsinC2 AsinC2.2 19 694
Anopheles sinensis SINENSIS AsinS2 AsinS2.5 13 204
Anopheles stephensi SDA-500 AsteS1 AsteS1.7 13 615
Anopheles stephensi Indian AsteI2 AsteI2.3 12 189
Biomphalaria glabrata BB02 BglaB1 BglaB1.6 31 985
Cimex lectularius Harlan ClecH1 ClecH1.3 15 292
Culex quinquefasciatus Johannesburg CpipJ2 CpipJ2.4 19 793
Glossina austeni TTRI GausT1 GausT1.7 20 099
Glossina brevipalpis IAEA GbreI1 GbreI1.7 14 991
Glossina fuscipes IAEA GfusI1 GfusI1.7 20 502
Glossina morsitans Yale GmorY1 GmorY1.9 12 869
Glossina pallidipes IAEA GpalI1 GpalI1.7 19 639
Glossina palpalis IAEA GpapI1 GpapI1.4 20 536
Ixodes scapularis Wikel IscaW1 IscaW1.6 23 340
Ixodes scapularis ISE6 ISE6 IscaI1.0 23 470
Leptotrombidium deliense UoL-UT LdelU1 LdelU1.1 15 015
Lutzomyia longipalpis Jacobina LlonJ1 LlonJ1.5 10 760
Musca domestica Aabys MdomA1 MdomA1.3 16 135
Pediculus humanus USDA PhumU2 PhumU2.4 11 712
Phlebotomus papatasi Israel PpapI1 PpapI1.5 11 821
Rhodnius prolixus CDC RproC3 RproC3.3 15 738
Sarcoptes scabiei var. canis Arlian SscaA1 SscaA1.2 10 797
Stomoxys calcitrans USDA ScalU1 ScalU1.5 16 950

Expression data

The expression resource statistics have been updated to incorporate any new new or modified gene annotations.

Population Biology/Insecticide Resistance

26 projects have been added:

  • Limited risk of Zika virus transmission by five Aedes albopictus populations from Spain (VBP0000455: details, map, 5 collections, 5 samples, 0 phenotypes, 0 genotypes)
  • Exploring deeper genetic structures: Aedes aegypti in Brazil (VBP0000456: details, map, 15 collections, 510 samples, 0 phenotypes, 11814 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2008. (VBP0000457: details, map, 995 collections, 3724 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2009. (VBP0000458: details, map, 1103 collections, 4124 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2010. (VBP0000459: details, map, 1149 collections, 5180 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2011. (VBP0000460: details, map, 1237 collections, 5357 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2012. (VBP0000461: details, map, 1285 collections, 5435 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance from 2019-03-26 to 2019-06-02 by BG-Counter smart traps owned by Biogents AG. (VBP0000462: details, map, 154 collections, 154 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance from 2019-03-26 to 2019-06-02 by BG-Counter smart traps owned by Collier Mosquito Control District. (VBP0000463: details, map, 682 collections, 682 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2013. (VBP0000464: details, map, 1346 collections, 6321 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2014. (VBP0000465: details, map, 1338 collections, 6311 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2015. (VBP0000466: details, map, 1259 collections, 5909 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2016. (VBP0000467: details, map, 1161 collections, 5452 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2017. (VBP0000468: details, map, 1089 collections, 4562 samples, 0 phenotypes, 0 genotypes)
  • Lee County Mosquito Control Department data in Lee county, Florida, 2018. (VBP0000469: details, map, 1088 collections, 4585 samples, 0 phenotypes, 0 genotypes)
  • Knockdown resistance (kdr) mutations within seventeen field populations of Aedes albopictus from Beijing China: first report of a novel V1016G mutation and evolutionary origins of kdr haplotypes (VBP0000474: details, map, 17 collections, 17 samples, 0 phenotypes, 119 genotypes)
  • The polymorphism and geographical distribution of knockdown resistance of adult Anopheles sinensis populations in eastern China (VBP0000471: details, map, 11 collections, 11 samples, 0 phenotypes, 33 genotypes)
  • Morphological and Molecular Identification of Phlebotomus mascittii Grassi, 1908 Populations From Slovenia (VBP0000473: details, map, 7 collections, 14 samples, 0 phenotypes, 0 genotypes)
  • PCR-Based Bloodmeal Analysis of Aedes aegypti and Culex quinquefasciatus (Diptera: Culicidae) in St. George Parish, Grenada (VBP0000475: details, map, 49 collections, 69 samples, 1035 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2014 (VBP0000476: details, map, 2813 collections, 12534 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2015 (VBP0000477: details, map, 3125 collections, 13454 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2016 (VBP0000478: details, map, 2831 collections, 13874 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2017 (VBP0000479: details, map, 2742 collections, 12827 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2018 (VBP0000480: details, map, 2961 collections, 13078 samples, 0 phenotypes, 0 genotypes)
  • Resistance Status to Deltamethrin, Permethrin, and Temephos Along With Preliminary Resistance Mechanism in Aedes aegypti (Diptera: Culicidae) From Punjab, Pakistan (VBP0000470: details, map, 12 collections, 24 samples, 36 phenotypes, 0 genotypes)
  • Patterns of Abundance, Host Use, and Everglades Virus Infection in Culex (Melanoconion) cedecei Mosquitoes, Florida, USA (VBP0000472: details, map, 101 collections, 451 samples, 5412 phenotypes, 0 genotypes)
52 projects have been updated (usually to fix minor data inconsistencies):
  • Underestimation of foraging behaviour by standard field methods in malaria vector mosquitoes in southern Africa (VBP0000158: details, map, 6 collections, 6 samples, 5 phenotypes, 0 genotypes)
  • Increasing the potential for malaria elimination by targeting zoophilic vectors (VBP0000162: details, map, 189 collections, 795 samples, 980 phenotypes, 0 genotypes)
  • Mosquito surveillance in Manatee County, Florida, USA. 2015 (VBP0000255: details, map, 2453 collections, 15253 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Manatee County, Florida, USA. 2016 (VBP0000256: details, map, 2458 collections, 15296 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Manatee County, Florida, USA. 2013 (VBP0000253: details, map, 2516 collections, 15620 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1970 (New Jersey light trap) (VBP0000432: details, map, 127 collections, 799 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1969 (New Jersey light trap) (VBP0000433: details, map, 107 collections, 679 samples, 0 phenotypes, 0 genotypes)
  • Socioeconomic Determinants of Aedes Mosquito Distribution in the Urban Environment in Panama. (VBP0000357: details, map, 1908 collections, 1908 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance, Northwest Mosquito and Vector Control District, in California, USA, 2015 (VBP0000400: details, map, 1357 collections, 7362 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1997 (New Jersey light trap) (VBP0000409: details, map, 1357 collections, 7189 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1996 (New Jersey light trap) (VBP0000410: details, map, 1636 collections, 9831 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1995 (New Jersey light trap) (VBP0000411: details, map, 1752 collections, 9851 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1994 (New Jersey light trap) (VBP0000412: details, map, 1808 collections, 9685 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1993 (New Jersey light trap) (VBP0000413: details, map, 1354 collections, 9325 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1992 (New Jersey light trap) (VBP0000414: details, map, 1263 collections, 7393 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1991 (New Jersey light trap) (VBP0000415: details, map, 1368 collections, 7962 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1990 (New Jersey light trap) (VBP0000416: details, map, 1213 collections, 7276 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1989 (New Jersey light trap) (VBP0000417: details, map, 1284 collections, 6707 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1988 (New Jersey light trap) (VBP0000418: details, map, 1027 collections, 4707 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1987 (New Jersey light trap) (VBP0000419: details, map, 1033 collections, 5938 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1986 (New Jersey light trap) (VBP0000420: details, map, 1032 collections, 6474 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1985 (New Jersey light trap) (VBP0000421: details, map, 921 collections, 4878 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1984 (New Jersey light trap) (VBP0000422: details, map, 1718 collections, 11992 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1983 (New Jersey light trap) (VBP0000423: details, map, 1376 collections, 8621 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1982 (New Jersey light trap) (VBP0000424: details, map, 986 collections, 7750 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1981 (New Jersey light trap) (VBP0000425: details, map, 1235 collections, 7883 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1980 (New Jersey light trap) (VBP0000426: details, map, 2100 collections, 14921 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1979 (New Jersey light trap) (VBP0000427: details, map, 1834 collections, 13222 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1978 (New Jersey light trap) (VBP0000428: details, map, 1878 collections, 14355 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1977 (New Jersey light trap) (VBP0000429: details, map, 1938 collections, 15599 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1976 (New Jersey light trap) (VBP0000430: details, map, 1776 collections, 11331 samples, 0 phenotypes, 0 genotypes)
  • State-wide mosquito surveillance in Iowa, USA, 1975 (New Jersey light trap) (VBP0000431: details, map, 112 collections, 1086 samples, 0 phenotypes, 0 genotypes)
  • Insecticide susceptibility tests of Anopheles minimus s.l., Aedes aegypti, Aedes albopictus, and Culex quinquefasciatus in northern Thailand (VBP0000063: details, map, 23 collections, 23 samples, 66 phenotypes, 0 genotypes)
  • Mosquito surveillance in Marion County, Indiana, USA. 2018 (VBP0000340: details, map, 1771 collections, 6066 samples, 0 phenotypes, 0 genotypes)
  • Spatiotemporal distribution of insecticide resistance in Anopheles culicifacies and Anopheles subpictus in Sri Lanka. (VBP0000014: details, map, 121 collections, 123 samples, 187 phenotypes, 0 genotypes)
  • ANVR 1st dataset (VBP0000009: details, map, 228 collections, 228 samples, 456 phenotypes, 0 genotypes)
  • Differential selection of malathion resistance in Anopheles culicifacies A and Anopheles culicifacies B (Diptera, Culicidae) in Haryana State, India (VBP0000058: details, map, 4 collections, 4 samples, 17 phenotypes, 0 genotypes)
  • Resistance in Anopheles culicifacies sibling species B and C to Malathion in Andhra Pradesh and Gujarat states, India (VBP0000060: details, map, 15 collections, 15 samples, 33 phenotypes, 0 genotypes)
  • Anopheles culicifacies (Diptera, Culicidae) - DDT resistance in Sri Lanka prior to and after cessation of DDT spraying (VBP0000061: details, map, 19 collections, 19 samples, 19 phenotypes, 0 genotypes)
  • Insecticide suceptibility status of certain populations of Aedes aegypti mosquito from rural areas of Maharashtra State (VBP0000089: details, map, 7 collections, 7 samples, 55 phenotypes, 0 genotypes)
  • Blood-feeding patterns of native mosquitoes and insights into their potential role as pathogen vectors in the Thames estuary region of the United Kingdom (VBP0000179: details, map, 2141 collections, 2141 samples, 1341 phenotypes, 0 genotypes)
  • Vector bionomics and malaria transmission in an area of sympatry of An. arabiensis, An. coluzzii and An. gambiae (VBP0000359: details, 0 collections, 0 samples, 0 phenotypes, 0 genotypes)
  • Insecticide susceptibility of Aedes albopictus and Ae. aegypti from Brazil and the Swiss-Italian border region. (VBP0000362: details, map, 5 collections, 1109 samples, 1154 phenotypes, 0 genotypes)
  • Increasing insecticide resistance in Anopheles funestus and Anopheles arabiensis in Malawi, 2011–2015 (VBP0000223: details, map, 103 collections, 202 samples, 202 phenotypes, 0 genotypes)
  • Mosquito surveillance in Manatee County, Florida, USA. 2014 (VBP0000254: details, map, 2661 collections, 17382 samples, 0 phenotypes, 0 genotypes)
  • Mosquito abundance and viral surveillance, Rhode Island Department of Environmental Management, in Rhode Island, USA, 2018 (VBP0000434: details, map, 413 collections, 2199 samples, 4398 phenotypes, 0 genotypes)
  • UK Culicoides surveillance, Pirbright Institute, UK, 2006 (VBP0000435: details, map, 235 collections, 3252 samples, 0 phenotypes, 0 genotypes)
  • Susceptibility status of Aedes aegypti (L.) (Diptera: Culicidae) to temephos in Venezuela (VBP0000447: details, map, 6 collections, 12 samples, 36 phenotypes, 0 genotypes)
  • Resistance to Malathion and Deltamethrin in Aedes aegypti (Diptera: Culicidae) From Western Venezuela (VBP0000450: details, map, 8 collections, 8 samples, 96 phenotypes, 0 genotypes)
  • Analyzing mosquito diversity in Pakistan by DNA barcoding. (VBP0000449: details, map, 1583 collections, 1583 samples, 0 phenotypes, 1583 genotypes)
  • Novel Insights into Malaria Vector Surveillance in Madagascar Using a Quadrant Enabled Screen Trap (QUEST) and Bloodmeal Detection Assay for Regional Transmission (BLOODART) (VBP0000345: details, map, 298 collections, 1252 samples, 6652 phenotypes, 0 genotypes)
  • Cow-baited tents are highly effective in sampling diverse Anopheles malaria vectors in Cambodia (VBP0000209: details, map, 15 collections, 225 samples, 94 phenotypes, 0 genotypes)

Variation Data

Summary of available variation data by organism

Reference speciesAssemblySNP callsIndel calls
Aedes aegypti LVP_AGWGAaegL5314,6331,770
Anopheles arabiensis DongolaAaraD110,164,3391,022,752
Anopheles culicifacies A-37AculA19,154,354900,063
Anopheles epiroticus Epiroticus2AepiE13,281,528267,653
Anopheles farauti FAR1AfarF27,226,209871,433
Anopheles funestus FUMOZAfunF311,668,927380,525
Anopheles gambiae PESTAgamP459,236,5362,168,425
Anopheles melas CM1001059_AAmelC23,677,409418,730
Anopheles merus MAFAmerM26,053,485558,680
Anopheles minimus MINIMUS1AminM14,206,083222,877
Anopheles quadriannulatus SANGWEAquaS110,137,655931,982
Anopheles sinensis SINENSISAsinS25,841,551409,698
Anopheles stephensi SDA-500AsteS15,856,684574,778
Anopheles stephensi IndianAsteI2366,3670
Biomphalaria glabrata BB02BglaB110,031,3950
Culex quinquefasciatus JohannesburgCpipJ220
Ixodes scapularis WikelIscaW11,776,3520

Tutorials

Follow this link for all the site tutorials, which includes material such as videos with its slides, practice exercises with answer keys, and sample files. Visit our new YouTube Channel to watch all our video tutorials, we plan to add one for each release. The video slides (including demo outlines), are in our regular tutorial pages. The new and updated tutorials for this release are:


Future releases

The next VectorBase release VB-2019-08 is scheduled for late August.

Other known issues

  • https://www.vectorbase.org/downloadinfo/anopheles-funestus-fumozscaffoldsafunf3fagz is an empty file and does not work with BLAST or other tools.

Please report any problems to the helpdesk.

Release date: 
Tuesday, June 25, 2019