Release VB-2019-08

We are pleased to announce the August 2019 release of VectorBase (VB-2019-08):

Genomes

Released genomes, with gene predictions

Organism Strain Assembly Gene set Gene Count Browser
Aedes aegypti Liverpool AGWG AaegL5 AaegL5.2 19 763
Aedes albopictus Foshan AaloF1 AaloF1.2 18 294
Anopheles albimanus STECLA AalbS2 AalbS2.6 12 504
Anopheles arabiensis Dongola AaraD1 AaraD1.11 13 685
Anopheles atroparvus EBRO AatrE3 AatrE3.1 14 078
Anopheles christyi ACHKN1017 AchrA1 AchrA1.7 11 185
Anopheles coluzzii Ngousso AcolN1 AcolN1.0 13 299
Anopheles coluzzii Mali-NIH AcolM1 AcolM1.8 14 796
Anopheles culicifacies A A-37 AculA1 AculA1.6 14 727
Anopheles darlingi Coari AdarC3 AdarC3.8 11 002
Anopheles dirus WRAIR2 AdirW1 AdirW1.8 13 251
Anopheles epiroticus Epiroticus2 AepiE1 AepiE1.7 12 286
Anopheles farauti FAR1 AfarF2 AfarF2.6 13 300
Anopheles funestus FUMOZ AfunF3 AfunF3.1 14 176
Anopheles gambiae PEST AgamP4 AgamP4.12 13 796
Anopheles maculatus maculatus3 AmacM1 AmacM1.5 15 018
Anopheles melas CM1001059_A AmelC2 AmelC2.6 15 765
Anopheles merus MAF AmerM2 AmerM2.9 13 605
Anopheles minimus MINIMUS1 AminM1 AminM1.8 13 127
Anopheles quadriannulatus SANGWE AquaS1 AquaS1.11 13 934
Anopheles sinensis China AsinC2 AsinC2.2 19 694
Anopheles sinensis SINENSIS AsinS2 AsinS2.5 13 204
Anopheles stephensi SDA-500 AsteS1 AsteS1.7 13 615
Anopheles stephensi Indian AsteI2 AsteI2.3 12 189
Biomphalaria glabrata BB02 BglaB1 BglaB1.6 31 985
Cimex lectularius Harlan ClecH1 ClecH1.3 15 292
Culex quinquefasciatus Johannesburg CpipJ2 CpipJ2.4 19 793
Glossina austeni TTRI GausT1 GausT1.7 20 099
Glossina brevipalpis IAEA GbreI1 GbreI1.7 14 991
Glossina fuscipes IAEA GfusI1 GfusI1.7 20 502
Glossina morsitans Yale GmorY1 GmorY1.9 12 869
Glossina pallidipes IAEA GpalI1 GpalI1.7 19 639
Glossina palpalis IAEA GpapI1 GpapI1.4 20 536
Ixodes scapularis Wikel IscaW1 IscaW1.6 23 340
Ixodes scapularis ISE6 ISE6 IscaI1.0 23 470
Leptotrombidium deliense UoL-UT LdelU1 LdelU1.1 15 015
Lutzomyia longipalpis Jacobina LlonJ1 LlonJ1.5 10 760
Musca domestica Aabys MdomA1 MdomA1.3 16 135
Pediculus humanus USDA PhumU2 PhumU2.4 11 712
Phlebotomus papatasi Israel PpapI1 PpapI1.5 11 821
Rhodnius prolixus CDC RproC3 RproC3.3 15 738
Sarcoptes scabiei var. canis Arlian SscaA1 SscaA1.2 10 797
Stomoxys calcitrans USDA ScalU1 ScalU1.5 16 950

Expression data

No new expression data added or updated this release (no new gene annotations).

Population Biology/Insecticide Resistance

72 projects have been added:

  • Evidence for temporal population replacement and the signature of ecological adaptation in a major Neotropical malaria vector in Amazonian Peru (VBP0000527: details, map, 259 collections, 927 samples, 0 phenotypes, 22760 genotypes)
  • Franklin County Public Health data in Franklin county, Ohio, 2011. (VBP0000488: details, map, 763 collections, 777 samples, 736 phenotypes, 0 genotypes)
  • Franklin County Public Health data in Franklin county, Ohio, 2012. (VBP0000489: details, map, 762 collections, 781 samples, 779 phenotypes, 0 genotypes)
  • Franklin County Public Health data in Franklin county, Ohio, 2013. (VBP0000490: details, map, 855 collections, 855 samples, 604 phenotypes, 0 genotypes)
  • Franklin County Public Health data in Franklin county, Ohio, 2014. (VBP0000491: details, map, 955 collections, 958 samples, 768 phenotypes, 0 genotypes)
  • Franklin County Public Health data in Franklin county, Ohio, 2016. (VBP0000492: details, map, 980 collections, 982 samples, 853 phenotypes, 0 genotypes)
  • Franklin County Public Health data in Franklin county, Ohio, 2017. (VBP0000493: details, map, 1056 collections, 1064 samples, 711 phenotypes, 0 genotypes)
  • Maryland Dept. of Agriculture mosquito surveillance, Maryland, USA, 2018 (VBP0000526: details, map, 301 collections, 1451 samples, 0 phenotypes, 0 genotypes)
  • Montana State University mosquito data for 2017 (VBP0000546: details, map, 176 collections, 2016 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance from 2019-06-03 to 2019-07-17 by BG-Counter smart traps owned by Biogents AG. (VBP0000511: details, map, 118 collections, 118 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance from 2019-06-03 to 2019-07-17 by BG-Counter smart traps owned by Collier Mosquito Control District. (VBP0000512: details, map, 358 collections, 358 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2008 (VBP0000536: details, map, 1097 collections, 6738 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2009 (VBP0000537: details, map, 1318 collections, 9106 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2010 (VBP0000538: details, map, 1345 collections, 6751 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2011 (VBP0000539: details, map, 1430 collections, 9270 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2012 (VBP0000553: details, map, 1462 collections, 10335 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2013 (VBP0000540: details, map, 1446 collections, 9225 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2014 (VBP0000542: details, map, 1345 collections, 10134 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2015 (VBP0000544: details, map, 1391 collections, 9452 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2016 (VBP0000547: details, map, 1548 collections, 10967 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2017 (VBP0000549: details, map, 1543 collections, 11467 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in City of Suffolk, Virginia, USA. 23434, 2018 (VBP0000551: details, map, 1878 collections, 12697 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1980 (VBP0000482: details, map, 1187 collections, 7231 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1981 (VBP0000483: details, map, 1270 collections, 7360 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1982 (VBP0000484: details, map, 1376 collections, 8552 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1983 (VBP0000485: details, map, 1550 collections, 8921 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1984 (VBP0000486: details, map, 1538 collections, 9131 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1985 (VBP0000487: details, map, 1580 collections, 8026 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1986 (VBP0000494: details, map, 1576 collections, 9400 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1987 (VBP0000495: details, map, 1810 collections, 10580 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1988 (VBP0000496: details, map, 1535 collections, 7696 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1989 (VBP0000497: details, map, 1586 collections, 10443 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1990 (VBP0000498: details, map, 1757 collections, 10870 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1991 (VBP0000499: details, map, 1593 collections, 9996 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1992 (VBP0000500: details, map, 1629 collections, 7981 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1993 (VBP0000501: details, map, 1835 collections, 12205 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1994 (VBP0000502: details, map, 2001 collections, 10489 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1995 (VBP0000503: details, map, 1771 collections, 10592 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1996 (VBP0000506: details, map, 1621 collections, 9829 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1997 (VBP0000507: details, map, 1643 collections, 8212 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1998 (VBP0000508: details, map, 1626 collections, 10400 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 1999 (VBP0000509: details, map, 1651 collections, 10598 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2000 (VBP0000510: details, map, 1709 collections, 11165 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2001 (VBP0000513: details, map, 1789 collections, 9821 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2002 (VBP0000514: details, map, 2570 collections, 11344 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2003 (VBP0000515: details, map, 2597 collections, 12063 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2004 (VBP0000516: details, map, 2577 collections, 11246 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2005 (VBP0000517: details, map, 2489 collections, 8970 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2006 (VBP0000518: details, map, 2627 collections, 10178 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2007 (VBP0000519: details, map, 2894 collections, 11731 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2008 (VBP0000520: details, map, 3287 collections, 13150 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2009 (VBP0000521: details, map, 3194 collections, 12660 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2010 (VBP0000522: details, map, 3372 collections, 14757 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2011 (VBP0000523: details, map, 3259 collections, 13346 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2012 (VBP0000524: details, map, 3209 collections, 11654 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in Desplaines Valley Mosquito Abatement, Illinois, USA, 2013 (VBP0000525: details, map, 3089 collections, 12155 samples, 0 phenotypes, 0 genotypes)
  • Mosquito surveillance in South Walton County, Florida, USA. 2014 (VBP0000481: details, map, 251 collections, 599 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2005 (VBP0000529: details, map, 814 collections, 5293 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2006 (VBP0000530: details, map, 930 collections, 5237 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2007 (VBP0000531: details, map, 827 collections, 5392 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2008 (VBP0000532: details, map, 997 collections, 5535 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2009 (VBP0000533: details, map, 934 collections, 5566 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2010 (VBP0000534: details, map, 874 collections, 5973 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2011 (VBP0000535: details, map, 749 collections, 4901 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2012 (VBP0000541: details, map, 752 collections, 3424 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2013 (VBP0000543: details, map, 741 collections, 4481 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2014 (VBP0000545: details, map, 693 collections, 4235 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2015 (VBP0000548: details, map, 680 collections, 3829 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2016 (VBP0000550: details, map, 753 collections, 4176 samples, 0 phenotypes, 0 genotypes)
  • North Dakota State Department of Health mosquito data for 2017 (VBP0000552: details, map, 435 collections, 2162 samples, 0 phenotypes, 0 genotypes)
  • Sand Fly Genome Project - Lutzomyia (VBP0000505: details, map, 4 collections, 70 samples, 0 phenotypes, 0 genotypes)
  • Sand Fly Genome Project - Phlebotomus (VBP0000504: details, map, 4 collections, 20 samples, 0 phenotypes, 0 genotypes)

Variation Data

Summary of available variation data by organism

Reference speciesAssemblySNP callsIndel calls
Aedes aegypti LVP_AGWGAaegL5314,6331,770
Anopheles arabiensis DongolaAaraD110,164,3391,022,752
Anopheles culicifacies A-37AculA19,154,354900,063
Anopheles epiroticus Epiroticus2AepiE13,281,528267,653
Anopheles farauti FAR1AfarF27,226,209871,433
Anopheles funestus FUMOZAfunF311,668,927380,525
Anopheles gambiae PESTAgamP459,236,5362,168,425
Anopheles melas CM1001059_AAmelC23,677,409418,730
Anopheles merus MAFAmerM26,053,485558,680
Anopheles minimus MINIMUS1AminM14,206,083222,877
Anopheles quadriannulatus SANGWEAquaS110,137,655931,982
Anopheles sinensis SINENSISAsinS25,841,551409,698
Anopheles stephensi SDA-500AsteS15,856,684574,778
Anopheles stephensi IndianAsteI2366,3670
Biomphalaria glabrata BB02BglaB110,031,3950
Culex quinquefasciatus JohannesburgCpipJ25,89743
Ixodes scapularis WikelIscaW11,776,3520
Lutzomyia longipalpis JacobinaLlonJ14,821,8470
Phlebotomus papatasi IsraelPpapI14,317,6040

Tutorials

Follow this link for all the site tutorials, which includes material such as videos with its slides, practice exercises with answer keys, and sample files. Visit our YouTube Channel to watch all our video tutorials. The video slides (including demo outlines), are in our regular tutorial pages.

Future releases

There is not a next planned VectorBase release..

Other known issues

Please report any problems to the helpdesk.

Release date: 
Wednesday, August 28, 2019